PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G178600.8.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NF-YA
Protein Properties Length: 201aa    MW: 22227.3 Da    PI: 7.4381
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G178600.8.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.54.4e-33107163158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        +ep+YVNaKQy++Il+RRq+Rak+e+e+k+  k+rkpylheSRh hAlrR+Rg+gGrF
  Aqcoe1G178600.8.p 107 EEPVYVNAKQYHGILRRRQSRAKAESENKM-LKCRKPYLHESRHLHALRRARGCGGRF 163
                        69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.8E-36105166IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.622106166IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.3E-28108163IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.6E-24109131IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860111131IPR018362CCAAT-binding factor, conserved site
PRINTSPR006165.6E-24140163IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MSSSVEDYSS NSDNSRADGQ HQHSESQTQS QSQSPASGTV HSNLAPFSAE YMMPPHLEVG  60
HAVAPPAYPY PDPYYRSIFN PYGAQPMIHP HLMGIQAAVP LPSDAVEEPV YVNAKQYHGI  120
LRRRQSRAKA ESENKMLKCR KPYLHESRHL HALRRARGCG GRFLNVKPDE NEENNAASHD  180
STQRDTGDSN KQNSSSEKSS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-21106167162NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241195.13e-83PREDICTED: nuclear transcription factor Y subunit A-7 isoform X2
SwissprotQ84JP12e-52NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A2G5D8N41e-146A0A2G5D8N4_AQUCA; Uncharacterized protein
STRINGAquca_026_00359.11e-120(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.27e-45nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]