PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G183900.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Trihelix

Protein Properties

Length: 765aa MW: 85821.8 Da PI: 9.7958

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G183900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	71.4	1.6e-22	121	202	2	85
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 W+ qe+++L+++r eme +l ++ lk+plWe+vs+k++e+g++rs+k C ek++n++k+y ++k+++ + e+ +++ +f+ l Aqcoe1G183900.1.p 121 WQCQETMDLLKIRLEMEPTLLNATLKGPLWEDVSRKLAEKGYTRSAKNCMEKFKNIRKYYNRTKKSQAGS--EDGKSHCFFSWL 202 99******************************************************************95..444456688766 PP
2	trihelix	64.2	3e-20	286	369	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe++aL+++r+em+ + + W+evs+k+ ++g+ rs++ Ck k++nl++ yk keg+ ++++++s +f++le Aqcoe1G183900.1.p 286 RWQDQETMALLNIRSEMDAFFCYPTATCSPWKEVSRKLVQQGYIRSAQNCKVKFKNLRRNYKHSKEGRAGHQDRKS--SHFFSKLE 369 8*********************************************************************976666..67899886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	5.738	113	177	IPR017877	Myb-like domain
Pfam	PF13837	3.2E-15	121	202	No hit	No description
CDD	cd12203	2.91E-18	121	184	No hit	No description
Pfam	PF13837	4.0E-15	284	369	No hit	No description
PROSITE profile	PS50090	6.586	284	343	IPR017877	Myb-like domain
CDD	cd12203	1.19E-13	285	350	No hit	No description
Pfam	PF05266	3.4E-42	586	763	IPR007930	Protein of unknown function DUF724

Sequence ? help Back to Top
Protein Sequence Length: 765 aa Download sequence Send to blast
MDIMKQSTPE SNDEFLRPFK RIREVQPTPV SAKQCNARGT PITSSIEISA QCSQFTTRKG 60 KRNIIEAEHS ELIRFPKPRV QCQKEQYGVP MQQTEEPLGS GIEGLDRQAE NAVKRTRGGL 120 WQCQETMDLL KIRLEMEPTL LNATLKGPLW EDVSRKLAEK GYTRSAKNCM EKFKNIRKYY 180 NRTKKSQAGS EDGKSHCFFS WLKAFHNSAS ATKINYAATS KPNSAPTPVS IGIGMASSSE 240 RTQAPSSYNG TEAASPVSSR RPPRLSAKFK EVGGEEAYHS VPVRKRWQDQ ETMALLNIRS 300 EMDAFFCYPT ATCSPWKEVS RKLVQQGYIR SAQNCKVKFK NLRRNYKHSK EGRAGHQDRK 360 SSHFFSKLEG LSSTIGATTA TMATTSTPNL TPTPVSIRIK MVGSSGSIRT PPNSVMPAII 420 TTAAATQAGV SKFSFTNSNV KLPIGVPASA AADDVNLVPT DCRQNVLPST QKHQSLSLSL 480 RKFNPPINGD AANKNLTDHT QLLSLTVEKR VEANGDNLLM PNRAITPTHR SMKSLKHLQS 540 SNEVKSSLSL EAREDERALQ SNVTTNPYSS PIQQDQRQVH VEEDSLPFVK CAHSMWGIFE 600 SMKVFQLMPQ YPHFRPLGEE NEVLREGIAI GHMLNFANLV ENICKLHIED PKNRLENMLK 660 ALTDLEELGF AVQSIRSQLE ELLRIKDIYS QSNYNLKSAE EELVVRKCQL DEKQESINRL 720 NMQLQELLME MVRKCCNIAE LQRKVDSTKE RLHAVASDFA RTLR*

Sequence ? help Back to Top

Protein Sequence Length: 765 aa Download sequence Send to blast

MDIMKQSTPE SNDEFLRPFK RIREVQPTPV SAKQCNARGT PITSSIEISA QCSQFTTRKG  60
KRNIIEAEHS ELIRFPKPRV QCQKEQYGVP MQQTEEPLGS GIEGLDRQAE NAVKRTRGGL  120
WQCQETMDLL KIRLEMEPTL LNATLKGPLW EDVSRKLAEK GYTRSAKNCM EKFKNIRKYY  180
NRTKKSQAGS EDGKSHCFFS WLKAFHNSAS ATKINYAATS KPNSAPTPVS IGIGMASSSE  240
RTQAPSSYNG TEAASPVSSR RPPRLSAKFK EVGGEEAYHS VPVRKRWQDQ ETMALLNIRS  300
EMDAFFCYPT ATCSPWKEVS RKLVQQGYIR SAQNCKVKFK NLRRNYKHSK EGRAGHQDRK  360
SSHFFSKLEG LSSTIGATTA TMATTSTPNL TPTPVSIRIK MVGSSGSIRT PPNSVMPAII  420
TTAAATQAGV SKFSFTNSNV KLPIGVPASA AADDVNLVPT DCRQNVLPST QKHQSLSLSL  480
RKFNPPINGD AANKNLTDHT QLLSLTVEKR VEANGDNLLM PNRAITPTHR SMKSLKHLQS  540
SNEVKSSLSL EAREDERALQ SNVTTNPYSS PIQQDQRQVH VEEDSLPFVK CAHSMWGIFE  600
SMKVFQLMPQ YPHFRPLGEE NEVLREGIAI GHMLNFANLV ENICKLHIED PKNRLENMLK  660
ALTDLEELGF AVQSIRSQLE ELLRIKDIYS QSNYNLKSAE EELVVRKCQL DEKQESINRL  720
NMQLQELLME MVRKCCNIAE LQRKVDSTKE RLHAVASDFA RTLR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G5DDW4	0.0	A0A2G5DDW4_AQUCA; Uncharacterized protein
STRING	Aquca_022_00261.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	8e-26	GT-2-like 1

Link Out ? help Back to Top
Phytozome	Aqcoe1G183900.1.p