PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G184000.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Trihelix

Protein Properties

Length: 383aa MW: 42778.2 Da PI: 6.0992

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G184000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61.7	1.7e-19	144	227	2	85
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 W+ qe++aL+++r++m+ ++ +g k lWe+vs++++e+g++r++ +C++k+e +++ yk+ + + + ++s+ +++f+ l Aqcoe1G184000.1.p 144 WQCQETMALLTIRSNMDAAFHAGTFKRLLWEDVSRQLAEQGYTRTAMKCRKKFEYIRTFYKNKMKVGQAAALRDSEIYRFFSIL 227 99***********************************************************99999999999999999999866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.0E-12	143	210	No hit	No description
CDD	cd12203	3.79E-16	144	206	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MPDTSFPNPI ASPAHSTEFL ETILFSLRNM NGKMDDKLTP NETYSHCDGV SSSTTKLLTP 60 ESNDELLTHS KTRRDLERED VMEEELTKVL GFLKPHVESH EDQNVGLRRQ QMERSFCGTE 120 VKQGLKGVDY GTEHVVKRKR EHLWQCQETM ALLTIRSNMD AAFHAGTFKR LLWEDVSRQL 180 AEQGYTRTAM KCRKKFEYIR TFYKNKMKVG QAAALRDSEI YRFFSILKEL HSPVYGTTTT 240 LPAINTRTHP VSIRFISSGK TPSASDLEMP TNPTVASATT QIGLSRVICS DSGGGPPVNN 300 DLTISEIDCG QLLDPSVEKH QGLSLCLEKS NPPVNGGTDD EASTVEEHQA LSVEDTKLYL 360 CLEDYRGKDG SFVLSFPVNY LG*

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MPDTSFPNPI ASPAHSTEFL ETILFSLRNM NGKMDDKLTP NETYSHCDGV SSSTTKLLTP  60
ESNDELLTHS KTRRDLERED VMEEELTKVL GFLKPHVESH EDQNVGLRRQ QMERSFCGTE  120
VKQGLKGVDY GTEHVVKRKR EHLWQCQETM ALLTIRSNMD AAFHAGTFKR LLWEDVSRQL  180
AEQGYTRTAM KCRKKFEYIR TFYKNKMKVG QAAALRDSEI YRFFSILKEL HSPVYGTTTT  240
LPAINTRTHP VSIRFISSGK TPSASDLEMP TNPTVASATT QIGLSRVICS DSGGGPPVNN  300
DLTISEIDCG QLLDPSVEKH QGLSLCLEKS NPPVNGGTDD EASTVEEHQA LSVEDTKLYL  360
CLEDYRGKDG SFVLSFPVNY LG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	4e-18	GT-2-like 1

Link Out ? help Back to Top
Phytozome	Aqcoe1G184000.1.p