PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G184300.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 230aa MW: 26453.8 Da PI: 10.0645

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G184300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	89.9	3.6e-28	20	111	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn YA+ GFs+rk ++s r++++t+r fvCs+eg+r+e++ + + +r+ a+tr+gCka+l vkk+++g+w+v++++ eHnH+lap Aqcoe1G184300.1.p 20 FYNGYARYSGFSIRKGPLYRSARDRSVTSRIFVCSREGFRRETSALneRGNIKRRMAVTRVGCKAQLWVKKQDSGNWVVKQFQPEHNHDLAP 111 9**************************************9988744556678999******************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.7E-26	20	111	IPR004330	FAR1 DNA binding domain
Gene3D	G3DSA:3.90.1550.10	7.2E-4	115	180	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
LNLEPYVGQE FKSEHEARAF YNGYARYSGF SIRKGPLYRS ARDRSVTSRI FVCSREGFRR 60 ETSALNERGN IKRRMAVTRV GCKAQLWVKK QDSGNWVVKQ FQPEHNHDLA PTTVHRLRSH 120 RSMIDNLKEY VETLKGAGVD TSKIQSLFVE EARGMSNAGV SENDVESEDK KKIRELSTEL 180 HRERRRSAAY QEQLRKLLKD MEDHAQHLSK QIEDIVGDMK DLGGNNRLS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026432594.1	1e-120	protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	A0A2G5CEL7	1e-166	A0A2G5CEL7_AQUCA; Uncharacterized protein
STRING	Aquca_058_00085.1	1e-167	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-40	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Aqcoe1G184300.1.p