PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G185500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ARF
Protein Properties Length: 837aa    MW: 92990.6 Da    PI: 6.3161
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G185500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.72.6e-24129229198
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   
  Aqcoe1G185500.1.p 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHGTEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI-- 216
                        99*****************************8544444..48************************************************.. PP

                        SSSEE..EEEEE- CS
                 B3  86 grsefelvvkvfr 98 
                        ++++ +l+++++ 
  Aqcoe1G185500.1.p 217 WNEKNQLHLGIRH 229
                        8889999999986 PP
2Auxin_resp114.59.9e-38255337182
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                        aahaa+t+s F+++YnPra++seFv+++ k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+W s+
  Aqcoe1G185500.1.p 255 AAHAAATNSRFTIFYNPRATPSEFVIPLTKYAKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSNWCSV 337
                        79*********************************9789*****************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-49114258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.9E-43122244IPR015300DNA-binding pseudobarrel domain
CDDcd100171.47E-22128228No hitNo description
PROSITE profilePS5086312.858129231IPR003340B3 DNA binding domain
PfamPF023622.0E-22129230IPR003340B3 DNA binding domain
SMARTSM010197.3E-25129231IPR003340B3 DNA binding domain
PfamPF065077.0E-33255337IPR010525Auxin response factor
PfamPF023091.1E-7692790IPR033389AUX/IAA domain
SuperFamilySSF542772.55E-7701780No hitNo description
PROSITE profilePS5174523.973705789IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MSTQMRISSS GFSNQTQEGR CMNSELWHAC AGPLVSLPSV GSHVVYFPQG HSEQVTASTN  60
KEIDARIPNY PSLPPQLICQ LHDVTMHADV ETDEVYAQMT LQPLSQQEQK DVYLPAELGV  120
PSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF SQQPPAQELI ARDLHGTEWK  180
FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVIFIWNEK NQLHLGIRHA NRPQTMMPSS  240
VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRATPSEFVI PLTKYAKAVY HTRVSVGMRF  300
RMLFETEESS VRRYMGTITG ISDLDPVRWP NSNWCSVKVG WDESTAGERQ PRVSLWEIEP  360
LTTFPMYPSQ FSLGLKRPWP PGLPSLHGGK GDDLSINSPL MWLQGGGANR GIESLNFQGV  420
GVNPWVQTRL DASLLGLQSD MYHSMAASAL QEMRTMGSSQ QAPPSLPQVQ LSPNLPGSAL  480
MMRQMVQQSQ PQSAFLQNIH ENQSHNLGYG QAPFHLLQTQ LQEQKPQQQQ ELPSQQQIPD  540
IVSALAHYAS ASQSQSPMQN LSSLCQKQSF PESNANLVAS TGVSPLYNSL GSISQEETTN  600
LLDLPRSNAV ISSDGWLPRQ VGFESLLPSG VNQYLMPQVE QFGQQQTNIS PQNVPLSPLP  660
QREYSEDQEG TNFPLHSNMA TSSCLDESSF LQSPENEGQV NQPIRTFVKV YKSGSFGRSL  720
DITKFSGYQE LRSELECMFG LTGQLEDPLR SGWQLVFVDR ENDVLLLGDD PWQEFVNSVW  780
CIKILSPQEV QKMGKQGLEL LNPRQRLSGG SYNSYVNCED SRNLSPRSTS VSSLNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1582235951388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595218.10.0auxin response factor 6-like isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A2G5DDT00.0A0A2G5DDT0_AQUCA; Auxin response factor
STRINGAquca_022_00246.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.20.0auxin response factor 8
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]