PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G186000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MIKC_MADS
Protein Properties Length: 247aa    MW: 28678.5 Da    PI: 7.0265
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G186000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.61.2e-261262151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       k+ien++nrqvtfskRr g++KKA ELSvLCda+  +iifss+gkl+e+ s
  Aqcoe1G186000.1.p 12 KKIENTTNRQVTFSKRRGGLIKKARELSVLCDAQLGLIIFSSSGKLFEFTS 62
                       68***********************************************75 PP
2K-box79.21e-2675174298
              K-box   2 qkssgks...leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                        qk++gks    +++ a++ ++e+ +L+++++ Lq ++R++ Ge+L+ L++++L++LeqqLe s+ k+R++Kn+ll +q+++l++ke+ l+e+
  Aqcoe1G186000.1.p  75 QKATGKSikeYDNQCAQEVRHEMLRLRDQTDRLQASIRQYTGENLTALDYNDLNELEQQLEVSVDKVRARKNQLLQQQLDNLRRKEQILEEQ 166
                        55566654446777889999************************************************************************ PP

              K-box  91 nkaLrkkl 98 
                        n  L + +
  Aqcoe1G186000.1.p 167 NSHLYHSI 174
                        ***98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.268464IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-39463IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-32588IPR002100Transcription factor, MADS-box
CDDcd002652.32E-43581No hitNo description
PROSITE patternPS003500660IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-29626IPR002100Transcription factor, MADS-box
PfamPF003191.2E-241360IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-292641IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-294162IPR002100Transcription factor, MADS-box
PfamPF014862.1E-2489173IPR002487Transcription factor, K-box
PROSITE profilePS5129716.22890181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MVIMGRGKIE IKKIENTTNR QVTFSKRRGG LIKKARELSV LCDAQLGLII FSSSGKLFEF  60
TSEDNSMQEI LARYQKATGK SIKEYDNQCA QEVRHEMLRL RDQTDRLQAS IRQYTGENLT  120
ALDYNDLNEL EQQLEVSVDK VRARKNQLLQ QQLDNLRRKE QILEEQNSHL YHSILEQQAA  180
AEHHQAMMEH KVEHPMLEHF GLYATDEQAR NLLQLSPLSP QLHTFRLQPT QPNLQERGLQ  240
YPDLQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-20474169MEF2 CHIMERA
6byy_B2e-20474169MEF2 CHIMERA
6byy_C2e-20474169MEF2 CHIMERA
6byy_D2e-20474169MEF2 CHIMERA
6bz1_A2e-20474169MEF2 CHIMERA
6bz1_B2e-20474169MEF2 CHIMERA
6bz1_C2e-20474169MEF2 CHIMERA
6bz1_D2e-20474169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4367130.0AY436713.1 Aquilegia alpina B-sister lineage-like protein BS mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019053529.11e-118PREDICTED: MADS-box protein AeAP3-2-like
SwissprotQ9XGJ42e-84GGM13_GNEGN; MADS-box protein GGM13
TrEMBLA0A2G5DDR20.0A0A2G5DDR2_AQUCA; Uncharacterized protein (Fragment)
STRINGAquca_022_00241.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.25e-49MIKC_MADS family protein
Publications ? help Back to Top
  1. Winter KU, et al.
    MADS-box genes reveal that gnetophytes are more closely related to conifers than to flowering plants.
    Proc. Natl. Acad. Sci. U.S.A., 1999. 96(13): p. 7342-7
    [PMID:10377416]