PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G188900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GATA
Protein Properties Length: 211aa    MW: 23887.8 Da    PI: 6.506
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G188900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.5e-19152186135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C++Cgt kTplWR gp g+ktLCnaCG++yr+ +l
  Aqcoe1G188900.1.p 152 CRHCGTDKTPLWRLGPMGPKTLCNACGVRYRSGRL 186
                        *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.4E-16146196IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.52E-14148208No hitNo description
PROSITE profilePS5011412.004150182IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.6E-15150183IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.49E-15151200No hitNo description
PROSITE patternPS003440152177IPR000679Zinc finger, GATA-type
PfamPF003201.9E-17152186IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MEEDREWLLA NNFIDDSSFP KSGSSPLLVD SSPTSPEQIH VELEKRDLAS NGFMEDTERL  60
CPNKADELLA SLKVEILSAS PQCEGEGVCR IDSLTTSRQD LESKRRYLTD DDELSEDTQE  120
ERWPLKKKQR STKKCGRAWS LDVNPIAFVR RCRHCGTDKT PLWRLGPMGP KTLCNACGVR  180
YRSGRLVPEY RPVASPTFDC KRHSNSHRDS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.13e-34GATA transcription factor 9