PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G191300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 275aa    MW: 31771.1 Da    PI: 9.3203
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G191300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.92.1e-1924114198
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grsefe 91 
                        ffkvl++ d++  +rlv+p+kfa ++ ++   sk ++l+ +sg++W+vkl  +  ++++++++GW+eF++++ L+  Df+vF++  ++++f 
  Aqcoe1G191300.1.p  24 FFKVLIRDDYH--QRLVIPRKFAIKFREI--LSKFVILRGPSGNTWKVKL--SLAGDETIFEQGWQEFARDHSLEKFDFMVFRYCeWDTCF- 108
                        89999666665..56********999866..8999***************..8888889************************98677999. PP

                        .EEEEE- CS
                 B3  92 lvvkvfr 98 
                         +v++f+
  Aqcoe1G191300.1.p 109 -NVMMFD 114
                        .777765 PP
2B3512.6e-16156239187
                        EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        f+kv+ ps+v k+  l +pkk + ++ + k +e    +l    + r+W+v++   ++ +++ l++GW++Fv +n+L+egD ++F+l  +
  Aqcoe1G191300.1.p 156 FIKVMRPSHVYKRFFLPMPKKLMGKFcS-KAPE--IASLHVpANARTWTVTV--VRGTNSIGLSGGWSKFVMDNNLEEGDACLFELCIE 239
                        89*********************99953.4333..4777773555*******..99999**************************7633 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.8E-2521118IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.76122116IPR003340B3 DNA binding domain
SuperFamilySSF1019366.28E-2422118IPR015300DNA-binding pseudobarrel domain
CDDcd100178.00E-2122114No hitNo description
PfamPF023626.2E-1724113IPR003340B3 DNA binding domain
SMARTSM010199.1E-1524116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-19149257IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.59E-18151237IPR015300DNA-binding pseudobarrel domain
CDDcd100171.96E-15154236No hitNo description
PfamPF023624.7E-14156240IPR003340B3 DNA binding domain
PROSITE profilePS5086312.703156253IPR003340B3 DNA binding domain
SMARTSM010194.4E-9156255IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEIEDMVDDS EEHNKFEPCK GHLFFKVLIR DDYHQRLVIP RKFAIKFREI LSKFVILRGP  60
SGNTWKVKLS LAGDETIFEQ GWQEFARDHS LEKFDFMVFR YCEWDTCFNV MMFDLSGCEK  120
EAAVQRNITR SRPVTYKEVK RALQSARAVR SHKPKFIKVM RPSHVYKRFF LPMPKKLMGK  180
FCSKAPEIAS LHVPANARTW TVTVVRGTNS IGLSGGWSKF VMDNNLEEGD ACLFELCIEQ  240
GGTCTNPMIM EIDVSIFRVV DKIIPLRKVR GKLC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-23B3 family protein