PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G196200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 306aa    MW: 35598.9 Da    PI: 9.5069
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G196200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.99.3e-1913101599
                        -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                 B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                         ++++ +++g l++p +f+++ +  kees   +le +sg+ W v++   ++ + ++l++GW++F k++ L   +f+vF++ g ++f  +v++
  Aqcoe1G196200.1.p  13 IIHPSLNTTGYLRIPTDFMKHLE--KEESESAVLEGTSGNHWYVEI--FRTADDTILKNGWEKFLKDHSLGNYEFLVFSYAGGMCF--KVQI 98 
                        45788889999********5556..456778***************..9999999**************************99***..**** PP

                        E-S CS
                 B3  97 frk 99 
                        f+k
  Aqcoe1G196200.1.p  99 FDK 101
                        *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-235104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-225104IPR015300DNA-binding pseudobarrel domain
CDDcd100171.63E-148100No hitNo description
PROSITE profilePS5086313.2969102IPR003340B3 DNA binding domain
SMARTSM010195.1E-910102IPR003340B3 DNA binding domain
PfamPF023622.3E-1614101IPR003340B3 DNA binding domain
SuperFamilySSF1019369.42E-16211303IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-15212303IPR015300DNA-binding pseudobarrel domain
CDDcd100179.27E-13217303No hitNo description
SMARTSM010190.0021218306IPR003340B3 DNA binding domain
PfamPF023626.1E-8234303IPR003340B3 DNA binding domain
PROSITE profilePS508639.798260306IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MLEEDRKPAF YKIIHPSLNT TGYLRIPTDF MKHLEKEESE SAVLEGTSGN HWYVEIFRTA  60
DDTILKNGWE KFLKDHSLGN YEFLVFSYAG GMCFKVQIFD KTGCEQPING FQEAAISSGG  120
QKQDEFHEQP KKGFEYFRRK RGRPLKKLFI PALRRRGRPS IYSGLSHQFQ GKACTKNPVM  180
EEDSPETANT QLWPRMRQSN EEQKDWKAAL FNPNALHFVK CLSKYEMKPS SYYLKIPKIV  240
NAYLPKWKTE IDLMNHRGLW KVNFIPGTGF CGGWRAFVLD NQLKRGDICL FEFMGNLKLH  300
VHINPI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09780.12e-17B3 family protein