PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G199600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family WRKY
Protein Properties Length: 329aa    MW: 36520.6 Da    PI: 7.3796
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G199600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.33.2e-33184241259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dgy+WrKYGqK vk+s++prsYYrCts++C vkk+vers ++p++v++tYeg+Hnh+
  Aqcoe1G199600.1.p 184 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCIVKKRVERSFQNPSIVITTYEGQHNHH 241
                        8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-35168243IPR003657WRKY domain
SuperFamilySSF1182904.05E-29175243IPR003657WRKY domain
PROSITE profilePS5081131.835178243IPR003657WRKY domain
SMARTSM007742.9E-38183242IPR003657WRKY domain
PfamPF031061.7E-25184241IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MADHRTRDLY NLNIYQGDHA GINGTSNFPI LTTTSPFNQI PSTEPSVEYQ QHGFDPMNMS  60
FTDYLQGSMD YGALERAFDL SRSSSEVFSS IDGSGGQNTG GGVGETVGSG DISAVTPNSS  120
ISSSSTEAAG EEDSGKSKKN RQEKGCEDGS EMSKKVNKPK KKPEKRPREP RVAFMTESEV  180
DHLEDGYRWR KYGQKAVKNS PYPRSYYRCT SQKCIVKKRV ERSFQNPSIV ITTYEGQHNH  240
HSPATLRGNA SRMLVTPMLT SPTMGPSFHQ ELLMQVPHTS NLLSDTSSTI TTMPPHNLTT  300
LQQLQIPDYG LLQDMVPPFM HRQQQQQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-27173244778Probable WRKY transcription factor 4
2lex_A1e-27173244778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275648.11e-106PREDICTED: probable WRKY transcription factor 71
SwissprotQ8VWJ29e-65WRK28_ARATH; WRKY transcription factor 28
TrEMBLA0A2G5DDD60.0A0A2G5DDD6_AQUCA; Uncharacterized protein
STRINGAquca_022_00127.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.12e-55WRKY DNA-binding protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]