PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G199800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 167aa    MW: 19332.7 Da    PI: 8.0723
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G199800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.72.1e-1331109979
                        HHHHT.T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                 B3   9 dvlks.grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                        d  ++ +rl+lp+k +++         ++k ++++++ + d++  +W++ ++++k++ ryvl ++Wk+F+++n+++egD+
  Aqcoe1G199800.1.p  31 DIKNNqNRLYLPNKQIRQVltkeeiklMSKRHGTMEVHVFDTKVSVWKMHINWWKCK-RYVLNRNWKGFAQENNVEEGDT 109
                        44444499********9999888888866777899999999999********99997.9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.2E-1416126IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-1522131IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.13724130IPR003340B3 DNA binding domain
CDDcd100171.30E-829109No hitNo description
PfamPF023623.4E-1034110IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MPDCLREIII GDEVQGKDLK WLNTKHIYKS DIKNNQNRLY LPNKQIRQVL TKEEIKLMSK  60
RHGTMEVHVF DTKVSVWKMH INWWKCKRYV LNRNWKGFAQ ENNVEEGDTA EIWSFRNQLG  120
TLCFAINFRK NKKDQEPNGG ANTSGTASVK DRDGDGDDDD DTDTTA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-