PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G204800.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 734aa MW: 83788.1 Da PI: 8.6222

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G204800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.8	1.5e-17	63	156	2	90
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 fY+eY+++ GFs+r+++ ++ + ++ it+ +vCs+e +++++ k + + r++++ r++Cka+++v+k+k ++ +evt +e+ H+H Aqcoe1G204800.1.p 63 FYREYGRQEGFSTRIRTIDRKqHGSNMITSCLLVCSCERVHNRKEVKfggISGKPRNTSTVRCECKASMRVTKRKfEEIYEVTMVENTHSHG 154 9************998877255667889999**99999999999888999999************9*************9 PP FAR1 89 la 90 l+ Aqcoe1G204800.1.p 155 LV 156 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-14	63	156	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.0E-33	272	365	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence Send to blast
MELSKDDGVN NLEPIDLSGD DGEPNKCCNI GSPSNVTPKK DISKVETPHR GMTFKTVDDA 60 KTFYREYGRQ EGFSTRIRTI DRKQHGSNMI TSCLLVCSCE RVHNRKEVKF GGISGKPRNT 120 STVRCECKAS MRVTKRKFEE IYEVTMVENT HSHGLVSPCK RMNMRANKCM PEAAKKLTMV 180 FHDEGLPVAK VVSVFCGDTI GFTAKDCHNH FGSTKKKPKE GDATSVLHYF EKMSAEDPQF 240 YYAIQSDAKS RAVNFFWVDG RSRMQYEYFG DVVSFDTTYR TNAYKMPFAP FTGVNHHLMS 300 IQFGCGLLLD ETEGTFVWLF KTWLAAMGGR PPTSMITDQD KAMTSAVARV FPNTSHRHCL 360 WHITNKFPEK LAHVMHVNEN FSEELKLIIS GSYRTYDFER KWNEHMVKYK LVDQSWLKGI 420 YEARRTWVPA YHLDTFFAGM NTTGRSESMN SYYDMFLKPT TTLSDFVYSI DKLLRLIIKN 480 ERDSDYRTEH SSRIVGKDDL LLKHAGKVYT INVFGKFKSQ WDKAKGVYKI DKEEGGDNGF 540 NTYTLKSRNV NNPNFWKVIF NTSTLRGECE SMFEGGLVDG HETLEALRLT HGCRLATQLA 600 FDASTHDEIY KYLVEKFDEL SIEIAKRKET LNKSANSEVA SNQVSEELSI VDPSQVLLLN 660 PNISQTKGMR KEKYKASDSG RIKPGIEISQ EKKGRRCSCC QKVVNHDLRT CPNNPNRKKK 720 TTCTNDDHYP EES*

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence Send to blast

MELSKDDGVN NLEPIDLSGD DGEPNKCCNI GSPSNVTPKK DISKVETPHR GMTFKTVDDA  60
KTFYREYGRQ EGFSTRIRTI DRKQHGSNMI TSCLLVCSCE RVHNRKEVKF GGISGKPRNT  120
STVRCECKAS MRVTKRKFEE IYEVTMVENT HSHGLVSPCK RMNMRANKCM PEAAKKLTMV  180
FHDEGLPVAK VVSVFCGDTI GFTAKDCHNH FGSTKKKPKE GDATSVLHYF EKMSAEDPQF  240
YYAIQSDAKS RAVNFFWVDG RSRMQYEYFG DVVSFDTTYR TNAYKMPFAP FTGVNHHLMS  300
IQFGCGLLLD ETEGTFVWLF KTWLAAMGGR PPTSMITDQD KAMTSAVARV FPNTSHRHCL  360
WHITNKFPEK LAHVMHVNEN FSEELKLIIS GSYRTYDFER KWNEHMVKYK LVDQSWLKGI  420
YEARRTWVPA YHLDTFFAGM NTTGRSESMN SYYDMFLKPT TTLSDFVYSI DKLLRLIIKN  480
ERDSDYRTEH SSRIVGKDDL LLKHAGKVYT INVFGKFKSQ WDKAKGVYKI DKEEGGDNGF  540
NTYTLKSRNV NNPNFWKVIF NTSTLRGECE SMFEGGLVDG HETLEALRLT HGCRLATQLA  600
FDASTHDEIY KYLVEKFDEL SIEIAKRKET LNKSANSEVA SNQVSEELSI VDPSQVLLLN  660
PNISQTKGMR KEKYKASDSG RIKPGIEISQ EKKGRRCSCC QKVVNHDLRT CPNNPNRKKK  720
TTCTNDDHYP EES*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-107	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Aqcoe1G204800.1.p