PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G209900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25920.7 Da    PI: 9.3402
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G209900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.98.7e-31958150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       krien++nrqvtf+kRrng+lKKA+ELSvLC+aeva+i+fs++g+lyey+
  Aqcoe1G209900.1.p  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCEAEVALIVFSNRGRLYEYA 58
                       79***********************************************8 PP
2K-box106.82.6e-3580172799
              K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                          ++ea+   +qqe++k+k++ie Lq+++Rhl+Ge L+ Ls+keL+qLe++Lek++++iRskKne+ll++ie +qk+e el+++n +Lr+++
  Aqcoe1G209900.1.p  80 LTVSEANLLFYQQESSKMKQQIEILQNSNRHLMGEALSCLSIKELKQLESRLEKGISRIRSKKNEMLLAEIEFMQKREIELHNDNIYLREQI 171
                        448999999*********************************************************************************98 PP

              K-box  99 e 99 
                         
  Aqcoe1G209900.1.p 172 T 172
                        6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.599161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-33278IPR002100Transcription factor, MADS-box
CDDcd002653.32E-43278No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-32323IPR002100Transcription factor, MADS-box
PfamPF003197.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-323859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129715.68787177IPR002487Transcription factor, K-box
PfamPF014861.9E-2689171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCE AEVALIVFSN RGRLYEYANN  60
SVRKTIDRYK KTCGEGSSAL TVSEANLLFY QQESSKMKQQ IEILQNSNRH LMGEALSCLS  120
IKELKQLESR LEKGISRIRS KKNEMLLAEI EFMQKREIEL HNDNIYLREQ ITANERAQQH  180
MNSLPGNVYE AITSAPYNSR DFLQVNLRES KPNQYCDSTA LQLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-20169169MEF2C
5f28_B3e-20169169MEF2C
5f28_C3e-20169169MEF2C
5f28_D3e-20169169MEF2C
6byy_A3e-20169169MEF2 CHIMERA
6byy_B3e-20169169MEF2 CHIMERA
6byy_C3e-20169169MEF2 CHIMERA
6byy_D3e-20169169MEF2 CHIMERA
6bz1_A4e-20169169MEF2 CHIMERA
6bz1_B4e-20169169MEF2 CHIMERA
6bz1_C4e-20169169MEF2 CHIMERA
6bz1_D4e-20169169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4641100.0AY464110.1 Aquilegia alpina AGAMOUS-like protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026392031.11e-118floral homeotic protein AGAMOUS-like isoform X2
RefseqXP_026412871.11e-119floral homeotic protein AGAMOUS-like isoform X5
SwissprotQ93XH41e-112MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLA0A2G5DCU11e-162A0A2G5DCU1_AQUCA; Uncharacterized protein
STRINGAquca_022_00039.11e-163(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42830.12e-99MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]