PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G210500.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family DBB
Protein Properties Length: 208aa    MW: 22251.3 Da    PI: 5.9991
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G210500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.91.5e-06447542
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                        C+ +e  e++  C  ++  lC  C ++ H        H++vpl
  Aqcoe1G210500.2.p  4 QCNVCEAAEANVLCCADEAALCWACDEKVHAAnklaskHQRVPL 47
                       7******99*********************66899999999986 PP
2zf-B_box30.86.2e-105295138
           zf-B_box  1 seerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                       s+++kC+ +++    +fC +++ llC++C +++H        H+
  Aqcoe1G210500.2.p 52 SQMPKCDICQDTVGYFFCLEDRALLCRKCDVSIHTAnayvsgHQ 95
                       689********99*********************5455666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.708147IPR000315B-box-type zinc finger
CDDcd000211.19E-8347No hitNo description
SMARTSM003361.7E-10447IPR000315B-box-type zinc finger
SuperFamilySSF578451.97E-54590No hitNo description
PROSITE profilePS501199.2435299IPR000315B-box-type zinc finger
SMARTSM003362.7E-165299IPR000315B-box-type zinc finger
PfamPF006434.1E-85395IPR000315B-box-type zinc finger
CDDcd000213.57E-95599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MKIQCNVCEA AEANVLCCAD EAALCWACDE KVHAANKLAS KHQRVPLSNS SSQMPKCDIC  60
QDTVGYFFCL EDRALLCRKC DVSIHTANAY VSGHQRFLLT GVKVGLEATE PVGSSTKEAS  120
NSVKSPAAKV SQSVRGSSMP INGENNEALS RQVVGVVPVP KLSFSGGSTS ESIPEWPLDD  180
LLGITDFSNS YVFMEHGSSK VIPIYFI*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026392015.13e-97B-box zinc finger protein 22-like
SwissprotQ9SYM25e-77BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A2G5C3U11e-152A0A2G5C3U1_AQUCA; Uncharacterized protein
STRINGAquca_102_00007.11e-145(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-79light-regulated zinc finger protein 1