PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G238500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 752aa    MW: 86629.6 Da    PI: 9.2135
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G238500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.13e-1862156190
               FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnH 87 
                        +fY+eY+++ GFs+r+++  ++ + +++it+  +vCs+eg +++++ k    +++ r++++ r++Cka+++++k+k +  +evt +e+ H+H
  Aqcoe1G238500.1.p  62 NFYREYGRKEGFSTRTRTIDRKqHGSNTITSCLLVCSREGVHNRREVKfgrISRKPRNTSTVRCECKASMRLTKRKfEYIYEVTMVENAHSH 153
                        6**************999877735677899999***********9999888888999999****************9*************** PP

               FAR1  88 ela 90 
                         l+
  Aqcoe1G238500.1.p 154 GLV 156
                        997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-1562156IPR004330FAR1 DNA binding domain
PfamPF105514.1E-18272351IPR018289MULE transposase domain
PROSITE profilePS509668.741536568IPR007527Zinc finger, SWIM-type
PfamPF044342.1E-4541565IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MDLSKDDDVN NLEPIDLSGD DGEPNRCANI GSPSNETPKK DTSKAETPHL GMTFKTVGDA  60
KNFYREYGRK EGFSTRTRTI DRKQHGSNTI TSCLLVCSRE GVHNRREVKF GRISRKPRNT  120
STVRCECKAS MRLTKRKFEY IYEVTMVENA HSHGLVSPCK RMNMRVNKCM PEAAKKLTMV  180
FHDEGLPVAK VASVFCGDTI GFTAKDCHNH FGSTRKKPKE GDATVVFHYF EKMSAEDPQF  240
YYAIQSDAKG RAVNIFWVDG CSRMQYEYFG DVVSFDTTYR TNAYKMPFAP FTGVNHHLMS  300
IQFGCALLLD ETEGTFVWLF KTWLAAMAMT SAVARVFLNT RHRHCLWHIT NKFPGKLAHV  360
MHVNEKISEE LKLIISGSYR TYDFERKWNE HMVKYKLVDH SWLKSIYDAR RTWVPAYHLD  420
TFFAGMNTTG RSESMNSYYD MFLKPTTTFS DFVYSIDKDF DYRTEHSSRI VGKDDFLLKH  480
AGKVYTLNAF GKFKSQWDKA KGVYKIDKEV SGDNGFNTYT LKSRNINNPN FWNMIFNTST  540
LQGECECKYF SFMGLPCGHL LKVFWRHDID QIPDHFIMRR WTQKANTYRA MFEGGLVNGH  600
ETSEALRLTH GCRLATQLAF DASTHDEMYK YLVEKFDELS IEIAKRKETL NKSVNSEVAS  660
HQVSEELSIV DPSQVLLLNP NIFQTKGRKE KTKVNDSGRI KRGIEISQEK KRRRCSCCQK  720
VVNHDLRTCP KNPNRKKKAT CTNDDHCLEK S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_008219733.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-104FAR1-related sequence 5