PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G248400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ARF
Protein Properties Length: 876aa    MW: 96295.1 Da    PI: 5.8608
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G248400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.13.3e-23192293199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae++       ++ +   ++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + 
  Aqcoe1G248400.1.p 192 FCKTLTASDTSTHGGFSVPRRAAEDCfppldykQQRPW--QELSAKDLHGVEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLR- 280
                        99****************************87433333..58************************************************3. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                          +++ l+++++r+
  Aqcoe1G248400.1.p 281 -GDNGDLKLGIRRA 293
                        .3677789999986 PP
2Auxin_resp120.71.1e-39320399382
         Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                         a+stksvF+++YnPra +s+F+++++k++k+l++++s+GmRfkm+fet++++err++G+++gv dldp+rWp+SkWr+L
  Aqcoe1G248400.1.p 320 AAISTKSVFSIYYNPRANSSQFIIPFHKYSKSLNHSFSIGMRFKMRFETDEAAERRYMGMITGVGDLDPLRWPGSKWRCL 399
                        589****************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.7E-39186295IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.36E-41189296IPR015300DNA-binding pseudobarrel domain
CDDcd100171.25E-20190292No hitNo description
SMARTSM010191.2E-22192294IPR003340B3 DNA binding domain
PfamPF023624.4E-21192293IPR003340B3 DNA binding domain
PROSITE profilePS5086312.619192294IPR003340B3 DNA binding domain
PfamPF065071.6E-35320399IPR010525Auxin response factor
PROSITE profilePS5174520.517764848IPR000270PB1 domain
PfamPF023091.3E-5768846IPR033389AUX/IAA domain
SuperFamilySSF542774.22E-9768840No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 876 aa     Download sequence    Send to blast
MGVGFDLNNA IINDDIDDDE EEEEEEEEET SSPSATATVA AVLEGSSGSI KPSSSSTSST  60
ASLVSASTTT VASALSSSSS SDVSLELWHA CAGPLISLPK KGSIVVYFPQ GHLEQISDYP  120
AAKFYDLPPQ IFCRVVDVKL HAEVATDEVY AQVSLLPESE QFELKLKNGE VEEDLEEDEI  180
EGLGKSITPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYKQQRPWQ ELSAKDLHGV  240
EWKFRHIYRG QPRRHLLTTG WSAFVNKKKL VSGDAVLFLR GDNGDLKLGI RRAAQVKCGL  300
PFSVLCTQSL NVGTVAAVPA AISTKSVFSI YYNPRANSSQ FIIPFHKYSK SLNHSFSIGM  360
RFKMRFETDE AAERRYMGMI TGVGDLDPLR WPGSKWRCLV VRWDEDIVRN RQNRVSPWDI  420
EHSGSVLASN HYLASGSKRT RTDLPSPNPS FPASNQAGLS DFGESLGFQK VLQGQEYMGF  480
TSPYTGNPIQ NHHQSEVRKC IPGWNDMGMA RMGSGTVMQP GNSYVSYKGI GFGESVRFHK  540
VLQGQEIFPK PSHERALGDK WVQDNGGFGA NNGVHGSDVE NGWPMMMRGG STHVRQSGTS  600
LQASSPSSVL RFQQANTPVS YSNSLYGTCH QKEEIKNSFG LCNASKTLGG TLTSSSPYGH  660
QDTVEVFNSL YASKDQNEIG SLRPPVSHVT QKALRDSQGL PTGRSVCRLF GFSLEEETDV  720
VNREDTITPI TSSCITENLN LDILPSRVEQ LQFKPPVLIE TFGRSCTKVL KQGSVVGRAI  780
DITKLDGYAD LISELERLFN MKGLLNDPKK GWRIVYTDRE DDMMLVGDDP WKEFCNIVSK  840
ILIYTHDDEV LMTAVVKGNG AHSCSEDVLG VISHI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1208642122353Auxin response factor 1
4ldw_A1e-1208642122353Auxin response factor 1
4ldw_B1e-1208642122353Auxin response factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00021PBMTransfer from AT2G33860Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029121009.10.0auxin response factor 15 isoform X2
TrEMBLA0A2G5CUX40.0A0A2G5CUX4_AQUCA; Auxin response factor
STRINGAquca_036_00025.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.10.0ARF family protein