PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G251000.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

C2H2

Protein Properties

Length: 464aa MW: 51300.1 Da PI: 9.4447

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G251000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00034	59	79	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C k F r nL+ H r H Aqcoe1G251000.1.p 59 CEICEKGFQRDQNLQLHRRGH 79 *******************88 PP
2	zf-C2H2	15.6	4.5e-05	133	155	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H++t+ Aqcoe1G251000.1.p 133 WKCDKCSKRYAVQSDWKAHLKTC 155 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.61E-7	56	79	No hit	No description
Gene3D	G3DSA:3.30.160.60	8.7E-5	56	79	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.27	57	79	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.596	57	79	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	59	79	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	5.2E-5	121	154	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.61E-7	128	153	No hit	No description
SMART	SM00355	81	133	153	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MVKMGGETIT KAFTVLDPIV GFNPPIIKKK RNLPGTPDPD AEVVALSPKT LMATNRFLCE 60 ICEKGFQRDQ NLQLHRRGHN VPWKLRQRSS TEPKKRVYVC PEKTCVHHQP LRALGDLTGI 120 KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA HLKTCGTREY RCDCGTIFSR RDSFLNHRAF 180 CDALAEETAR VTATSSIDNS VITSSGNINY HIMGPSVPEP NNTYYFSSFT KRIPNKVEAI 240 NQTRPGVALW MEEGSSQVSQ TAGKSFSQSN TIGSLSLGTL YGDPFASCLS NQQANYHFDW 300 ALGSKLSALS AGDLTSTSLP LTNVKDITAT TLLTAPSLYS TQHHLYQPSQ ASMSATALLQ 360 KAAQMGASST SPSLLLNFGV QCKDNHAHDG KEFSDSSSPN TKLTTHCTAV EKWENDISAM 420 NLWQSYPSKR RIIQKDNTKE GQTRDFLGVG VKSLCTSPVN GYF*

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MVKMGGETIT KAFTVLDPIV GFNPPIIKKK RNLPGTPDPD AEVVALSPKT LMATNRFLCE  60
ICEKGFQRDQ NLQLHRRGHN VPWKLRQRSS TEPKKRVYVC PEKTCVHHQP LRALGDLTGI  120
KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA HLKTCGTREY RCDCGTIFSR RDSFLNHRAF  180
CDALAEETAR VTATSSIDNS VITSSGNINY HIMGPSVPEP NNTYYFSSFT KRIPNKVEAI  240
NQTRPGVALW MEEGSSQVSQ TAGKSFSQSN TIGSLSLGTL YGDPFASCLS NQQANYHFDW  300
ALGSKLSALS AGDLTSTSLP LTNVKDITAT TLLTAPSLYS TQHHLYQPSQ ASMSATALLQ  360
KAAQMGASST SPSLLLNFGV QCKDNHAHDG KEFSDSSSPN TKLTTHCTAV EKWENDISAM  420
NLWQSYPSKR RIIQKDNTKE GQTRDFLGVG VKSLCTSPVN GYF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-33	129	196	3	70	Zinc finger protein JACKDAW
5b3h_F	1e-33	129	196	3	70	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269\|PubMed:17785527, ECO:0000269\|PubMed:21935722, ECO:0000269\|PubMed:24821766, ECO:0000269\|PubMed:25829440}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269\|PubMed:21935722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010245572.1	0.0	PREDICTED: zinc finger protein MAGPIE-like
Swissprot	Q9ZWA6	1e-131	IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBL	A0A2G5CW37	0.0	A0A2G5CW37_AQUCA; Uncharacterized protein
STRING	Aquca_036_00044.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-134	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Aqcoe1G251000.1.p

Publications ? help Back to Top
Muñoz-Strale D,León G Identification of two highly specific pollen promoters using transcriptomic data. Plant Physiol. Biochem., 2014. 83: p. 292-9 [PMID:25208507] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]