PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G251800.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

NAC

Protein Properties

Length: 289aa MW: 32425.7 Da PI: 9.0613

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G251800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	106.2	4.1e-33	56	196	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk... 79 lp+G++F+Ptd+el+ e+L+ kv+++ ++ e +++ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ Aqcoe1G251800.1.p 56 LPAGVKFDPTDQELL-EHLEGKVRSDLrklhplID--EfipTLEGEnGICYTHPEKLP-GVSKDGLIRHFFHRPSKAYTTGTRKRRKVHtda 143 799**********.99*998855643322..22222333336******.555555677**************744446 PP NAM 80 ...sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v+ +g+ +g kk+Lv+y g+++k+ekt+Wvmh+y+l Aqcoe1G251800.1.p 144 eggETRWHKTGKTRPVFI-GGKIKGYKKILVLYtnYGKKRKPEKTNWVMHQYHL 196 555778********.99********6657999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-38	46	215	IPR003441	NAC domain
PROSITE profile	PS51005	33.802	56	215	IPR003441	NAC domain
Pfam	PF02365	7.4E-16	57	196	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MTWCNGSDDN NISTESSPTT LEIHGKPPVS KIETCPSCGY QIHSQEQAGI QDLPGLPAGV 60 KFDPTDQELL EHLEGKVRSD LRKLHPLIDE FIPTLEGENG ICYTHPEKLP GVSKDGLIRH 120 FFHRPSKAYT TGTRKRRKVH TDAEGGETRW HKTGKTRPVF IGGKIKGYKK ILVLYTNYGK 180 KRKPEKTNWV MHQYHLGSNE EEREGELVVS KVFYQTQPRQ CSSVVKESLL TKAKTRHGHE 240 GPSFKDTNLV EYYNPSLIVY DQGGHSRTSP PQLIPNFIVH AGGTSFLP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00459	DAP	Transfer from AT4G28500	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010245577.1	1e-160	PREDICTED: NAC domain-containing protein 73-like isoform X1
Swissprot	O49459	1e-122	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A2G5CV23	0.0	A0A2G5CV23_AQUCA; Uncharacterized protein
STRING	Aquca_036_00051.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-116	NAC domain containing protein 73

Link Out ? help Back to Top
Phytozome	Aqcoe1G251800.1.p

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]