PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G256100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 357aa    MW: 40034.6 Da    PI: 7.3289
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G256100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.11.7e-09114135426
                        ---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         +C +f+r GtC++G++C FaHg
  Aqcoe1G256100.1.p 114 NPCADFRR-GTCPRGETCEFAHG 135
                        58******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.51E-5109139IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-5110136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.535111137IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-7114135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-6115137IPR000571Zinc finger, CCCH-type
SMARTSM0035643145168IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MSSICEEHHH SHSHSYPLFS TLKDINLPPR KLLNRSKTSI EETQTPKTPM IIIPTHDDYE  60
EETDPYSSDE FRMYEFKIRR CMRSRSHDWT DCPFAHPGEK ARRRDPRRFH YSGNPCADFR  120
RGTCPRGETC EFAHGVFECW LHPARYRTHA CKDGRSCTRK VCFFAHTPRQ LRVLPISCES  180
QCSSPTIITN PNHSCSFCHS MASSPTSTLM DLSQLSPPLS PKLSSSPISP NGLRGNGSGG  240
GGYSLLSRFN EASMLSPNSS FSSKTRRSLS EYLSYKNALM ELMNSLEAMD LNLVDSPDYE  300
DDQPTQFFLS PTTTTTTTTT SSTRVGRSSR DIFNDQDGLS SNGGGPDLGW VNDLVM*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260283.11e-101PREDICTED: zinc finger CCCH domain-containing protein 2-like
SwissprotQ9ZWA11e-69C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A2G5CV860.0A0A2G5CV86_AQUCA; Uncharacterized protein
STRINGAquca_036_00085.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.14e-69C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]