PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G256600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 815aa    MW: 90390.1 Da    PI: 5.2468
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G256600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93.1e-07274293525
                        --SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                        +C+ffar G+C  G++CkF H
  Aqcoe1G256600.1.p 274 ICDFFAR-GWCIKGSSCKFLH 293
                        6******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.314269296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6269294IPR000571Zinc finger, CCCH-type
SMARTSM003560.0076269295IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-4274295IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-5274293IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 815 aa     Download sequence    Send to blast
MPSDSDSKPE LTNVGEEEEE EEPEEEEEPE EEEPEEEEEE EEKEKERSVD STLDSPSTVV  60
AANNDEEEQS VDSTLDSPST IVAANNDDSS QEVESEGHDE DLRLEKSNAS SVADSNEASG  120
GDCDSLNPSN KLQETQVKEL SHIGDGGSKA QALKKKLVSS ERSFSDKKVI GTQPQKTIDI  180
ECTDIQKDHE THSGAEETKS SCVDEKEIKA ETSMSNSVDK VSKSILLCKE DTKHMDMHSE  240
EVIKLKASSS ITPQIRPRTP VTEIDDGNKR PAIICDFFAR GWCIKGSSCK FLHQKDNVAS  300
TSKRTKQGAR AACSEDNLKE DEGLRVENRR PFVLSEPLAS SDVNGPSERI RVGEYGESQR  360
PHQFLDKHDM HPSAVAQGDF KFGSPGNAWA HKVAASGSQW KSFAGDENIR SSGMPNLMDY  420
KRSTREEFDR GYPSSFNNMV PEHRLLSNGS VTDSGIYLNS GYSHDNSIVG PPSMKLETRS  480
MTYGSHSSPG FFSSLNSRFN TSLPSTGISP LQQTFPWSGT APSQRSSPLG PMKPDHGYCT  540
SRSSFMFRHS SSPYYSRPDQ ENITLCGDPR DPLTARQPTI NNWEPSVPFR PSFHLPSFMS  600
SHRSQYDSLR ATIDLPNGGD MAFRDSSIRQ GATIHNIKNQ PENGDFNSFH TPSHHRALDR  660
DASTHGIGAS ENLAEGSGSF VAEQKNKSSL SKEEKSLKPG HIVNTSSAME VDRDRSLSRQ  720
ADSDKHNREF RTLKIFRAAL VEFMKELVKP HWHMGYLSKE AHNTVVKKAV DKVLSTLQPN  780
QIPYNAELTT NYFNLFRPKL ANLVEAYVRR HGKS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5CVA40.0A0A2G5CVA4_AQUCA; Uncharacterized protein
STRINGAquca_036_00087.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-21C3H family protein