PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G256600.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 793aa    MW: 88086.8 Da    PI: 5.6034
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G256600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93e-07252271525
                        --SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                        +C+ffar G+C  G++CkF H
  Aqcoe1G256600.2.p 252 ICDFFAR-GWCIKGSSCKFLH 271
                        6******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.314247274IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6247272IPR000571Zinc finger, CCCH-type
SMARTSM003560.0076247273IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-4252273IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-5252271IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 793 aa     Download sequence    Send to blast
MPSDSDSKPE LTNVGEEEEE EEPEEEEEPE EEEPEEEEEE EEKEKERSVD STLDSPSTVV  60
AANNDDSSQE VESEGHDEDL RLEKSNASSV ADSNEASGGD CDSLNPSNKL QETQVKELSH  120
IGDGGSKAQA LKKKLVSSER SFSDKKVIGT QPQKTIDIEC TDIQKDHETH SGAEETKSSC  180
VDEKEIKAET SMSNSVDKVS KSILLCKEDT KHMDMHSEEV IKLKASSSIT PQIRPRTPVT  240
EIDDGNKRPA IICDFFARGW CIKGSSCKFL HQKDNVASTS KRTKQGARAA CSEDNLKEDE  300
GLRVENRRPF VLSEPLASSD VNGPSERIRV GEYGESQRPH QFLDKHDMHP SAVAQGDFKF  360
GSPGNAWAHK VAASGSQWKS FAGDENIRSS GMPNLMDYKR STREEFDRGY PSSFNNMVPE  420
HRLLSNGSVT DSGIYLNSGY SHDNSIVGPP SMKLETRSMT YGSHSSPGFF SSLNSRFNTS  480
LPSTGISPLQ QTFPWSGTAP SQRSSPLGPM KPDHGYCTSR SSFMFRHSSS PYYSRPDQEN  540
ITLCGDPRDP LTARQPTINN WEPSVPFRPS FHLPSFMSSH RSQYDSLRAT IDLPNGGDMA  600
FRDSSIRQGA TIHNIKNQPE NGDFNSFHTP SHHRALDRDA STHGIGASEN LAEGSGSFVA  660
EQKNKSSLSK EEKSLKPGHI VNTSSAMEVD RDRSLSRQAD SDKHNREFRT LKIFRAALVE  720
FMKELVKPHW HMGYLSKEAH NTVVKKAVDK VLSTLQPNQI PYNAELTTNY FNLFRPKLAN  780
LVEAYVRRHG KS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5CVA40.0A0A2G5CVA4_AQUCA; Uncharacterized protein
STRINGAquca_036_00087.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-21C3H family protein