PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G258000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family SBP
Protein Properties Length: 185aa    MW: 21729.5 Da    PI: 9.8536
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G258000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP122.42e-3879155176
                        --SSTT-----TT-.-HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                SBP   1 lCqvegCeadlsea.keyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                        +Cq+++C++dl +  k yh +h+vCe+hskapvv+vsg+++rfCqqCsrfhelsefD+ krsCr+rLa+hnerrrk+
  Aqcoe1G258000.1.p  79 ICQADNCNVDLIKQdKMYHFKHRVCEFHSKAPVVIVSGVSKRFCQQCSRFHELSEFDDVKRSCRKRLAGHNERRRKA 155
                        5*********9765499**********************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.9E-2875142IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.65877155IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.12E-3479155IPR004333Transcription factor, SBP-box
PfamPF031103.1E-2980154IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
METNNLVRIE QEKQNLNKTP NKRLQLVHYE SDTEEEEEEA QNLFKYEHNN NNNNKRKLAS  60
TSSFNKKGPT FEKNSPEFIC QADNCNVDLI KQDKMYHFKH RVCEFHSKAP VVIVSGVSKR  120
FCQQCSRFHE LSEFDDVKRS CRKRLAGHNE RRRKALRLQL MKNHCRKSGE SKSSKKLQQT  180
DLSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-31791541084squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004303145.11e-36PREDICTED: squamosa promoter-binding protein 1-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.19e-35squamosa promoter binding protein-like 3