PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G258900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 413aa    MW: 46435 Da    PI: 4.5946
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G258900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.83.9e-13182276395
                        EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                 B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                        k+l++ d +++gr++lpkk  e +  +++ +e+++ltl+   s   W ++++y  +++s++y+++ +++++vk+n+L+ gD ++++  ++++
  Aqcoe1G258900.1.p 182 KELKRTDCGSQGRIILPKKDSEVNlpSLSAREGIQLTLREvGSTTIWCFRYRYwpNNNSRMYLFE-NTRDYVKQNELQIGDNIILY--KDEG 270
                        789999***************999**8999999*******67779********777777777776.********************..5677 PP

                        E..EEE CS
                 B3  90 felvvk 95 
                         el+++
  Aqcoe1G258900.1.p 271 NELYIS 276
                        777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-21173275IPR015300DNA-binding pseudobarrel domain
CDDcd100172.30E-18178275No hitNo description
SuperFamilySSF1019361.94E-16179275IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.2E-11180281IPR003340B3 DNA binding domain
PROSITE profilePS508639.206180281IPR003340B3 DNA binding domain
PfamPF023621.8E-10182276IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MDSNKPIATS NTTTSTTSPT SSATPNQEVN TTINHVDPLP PHLLLPPPHN YSSNCPNVAP  60
EAQIFPSHSY PYQGLHYQPN QSQSHPLVVP PYYLVPSISP AYKLDDSSRI LPMYLQYKWD  120
PSVSKEARNR RRMARQMSSS SCRTSEGSSS SGSSSILPTT TENEDNDLIA HDGKKLKFIL  180
RKELKRTDCG SQGRIILPKK DSEVNLPSLS AREGIQLTLR EVGSTTIWCF RYRYWPNNNS  240
RMYLFENTRD YVKQNELQIG DNIILYKDEG NELYISYKKA SVSISAPTNN EGGSSEVERS  300
LQGKPSEDSF SEFGHSSSNM VDEEDTWYEQ AGILLDEPTC ANDIMIDESQ QLEDSYCMDA  360
HKGYDFRDFE QLADFKDCDF SLYNKDDDLM QLNLDDDQNN KDKGGGSSSN DN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A8e-341712764109B3 domain-containing transcription factor LEC2
6j9c_D8e-341712764109B3 domain-containing transcription factor LEC2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.18e-34B3 family protein