PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G264600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 593aa    MW: 68391.3 Da    PI: 8.6702
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G264600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.22.4e-1753142291
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                        fYneYAk  GFsvrk++++    +g++ +r+f  s+ g r+ + ++ ++++++ r  tr++C a +++  ++  + w v  + ++HnH lap
  Aqcoe1G264600.1.p  53 FYNEYAKFKGFSVRKDHKTVI--DGTTRRRRFIYSCAGVRACKWTNlHKRRKKARRLTRCNCPAAMNIVYDDeLNMWTVRGFMSQHNHVLAP 142
                        9**************987666..9999**************99998677788899*************9999899*************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.2E-1553142IPR004330FAR1 DNA binding domain
PfamPF105511.9E-35263357IPR018289MULE transposase domain
PROSITE profilePS5096610.806542578IPR007527Zinc finger, SWIM-type
SMARTSM005752.9E-6553580IPR006564Zinc finger, PMZ-type
PfamPF044343.4E-6554576IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MSAFVDEFVE DFSDDSEAEG DNPRRRSADF VYKVGLRLQD EIHDDMDEDA YFFYNEYAKF  60
KGFSVRKDHK TVIDGTTRRR RFIYSCAGVR ACKWTNLHKR RKKARRLTRC NCPAAMNIVY  120
DDELNMWTVR GFMSQHNHVL APPGGSHFLR SHRKVSLSNA VLAQNLYALG VGKKLVMDII  180
ISKSGSHAAA GCTARDLYNQ MNRARVERII DGDANLVNSF LEDMNVGDPG FFKKIQVNEK  240
KQLTKLFWSD SQSQEDYKLF GDVLMFDSTY HTNRYDMPLV VFAGVNNHRH TVIYALALMN  300
NETIDSYKWA LKTFLATMDG IAPKSVITDG DAAIRNAIEN VFPKSKHRLC VWHVVQNAIT  360
NVWTDGFVKG FVEAMFCKGP PDAFEKKWAE LLIEYKTVAE QKLVHNIYEK KEMWAEAYLR  420
EYFFAGCRSN QRCKSINSVV RLCVKSGLTL IELVDKLLQK IRHIRYRDFE AEVNTTMTRS  480
AQIPNLTLIG EQAEALYTRA GYEYLFKQLL HEPSYVVNES YEDGEDIIKY LVNRHMHPNA  540
PATVEYNREK DAYNCTCKLF ERVGFLCRHI LAVLKHTHVK ALPKSCILHR WT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EJ870.0A0A2G5EJ87_AQUCA; Uncharacterized protein
STRINGAquca_007_00263.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-95FAR1-related sequence 5