PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G270600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family HSF
Protein Properties Length: 194aa    MW: 22729.8 Da    PI: 8.2143
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G270600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.32.8e-34271192102
                        HHHHHHHHHCT.GGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
       HSF_DNA-bind   2 Flkklyeiled.eelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                        F+ klyeile+ ++ ++++sw+++g+ fvv+ ++ef++ +Lp+yFkh+nf+SF+RQLn+YgFkk  +++         weF+h +F++g+++
  Aqcoe1G270600.1.p  27 FILKLYEILEEgHDRNQIVSWNKEGTGFVVWSPDEFSELLLPRYFKHNNFSSFIRQLNTYGFKKCATNR---------WEFQHCKFQNGNRH 109
                        9********96257889************************************************9998.........************** PP

                        XXXXXXXXXX CS
       HSF_DNA-bind  93 llekikrkks 102
                        ll++i rkk 
  Aqcoe1G270600.1.p 110 LLQEITRKKC 119
                        *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.3E-3418111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.9E-4123117IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.22E-2824117IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.8E-3027117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-122851IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-126678IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-127991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MARETSELNW SILDSRANQS MRCPAPFILK LYEILEEGHD RNQIVSWNKE GTGFVVWSPD  60
EFSELLLPRY FKHNNFSSFI RQLNTYGFKK CATNRWEFQH CKFQNGNRHL LQEITRKKCE  120
PSVFPAFLKA SSSEPVGGVV DESSDLLLQE NENLRKEKLE LQMQIHQYKS LQMKLSDSLS  180
QYLVNQNQFR RTC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdk_A3e-19231177110Heat shock factor protein 2
5hdk_B3e-19231177110Heat shock factor protein 2
5hdk_C3e-19231177110Heat shock factor protein 2
5hdk_D3e-19231177110Heat shock factor protein 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506614.13e-76heat stress transcription factor B-2a
TrEMBLA0A2G5C6U61e-126A0A2G5C6U6_AQUCA; Uncharacterized protein
STRINGAquca_084_00048.11e-127(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-35heat shock factor 4