PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G292900.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

HB-other

Protein Properties

Length: 1161aa MW: 130518 Da PI: 8.4941

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G292900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	43.7	4.8e-14	30	78	9	57
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ql++Le l+ +++yps++e e+ A +l+Lt +qV+ WF rR kek+ Aqcoe1G292900.1.p 30 LLQLQTLEHLYSEDKYPSHKELEDFALSLNLTYKQVRGWFVERRRKEKR 78 569*********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	3.2E-11	22	83	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.35E-13	23	79	IPR009057	Homeodomain-like
CDD	cd00086	1.47E-11	27	79	No hit	No description
Pfam	PF00046	1.4E-11	30	78	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.1E-13	31	79	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.058	32	79	IPR001356	Homeobox domain
PROSITE profile	PS50827	12.22	382	441	IPR018501	DDT domain
SMART	SM00571	9.1E-12	382	441	IPR018501	DDT domain
Pfam	PF02791	5.1E-8	384	438	IPR018501	DDT domain
Pfam	PF15612	7.3E-6	663	704	IPR028942	WHIM1 domain
Pfam	PF15613	6.3E-10	797	868	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1161 aa Download sequence Send to blast
MGNSDEDGGG VGVCKMVFNN HGSITKRKTL LQLQTLEHLY SEDKYPSHKE LEDFALSLNL 60 TYKQVRGWFV ERRRKEKRET IETPTSPPIC YTNHLYHHSN PLPGSILQTN NQKQTMMHSV 120 DYILKKIFRK DGPPLGVTFD PLPLGAFHST TTTTGRRKKD LNSLAGQRNG PTCAQNQRMA 180 KKRKVSKSPI SQLEVNTKKS VSGNKHGMGK GLMTVWRATN AGARGYPMGV NTTDKYITDV 240 YFNSASANSR KPLQHEMRKK ESHKLTKKQG RAGNKLLERR KRAIVSSSKA DNPKKPHHAE 300 CKLALEGLRS QEYRNGTTKL VDDEELELRE LQAGPNPLTC SAHLASNTLH TCSLCKDLLA 360 RFPPQSVMMK QPLCVQPWGS LPELVKKLFK VFRFLYSCSD TLDICPFTLD EFAQAFHDKD 420 SLLLGRIHAT LLKLLFSDVG MAVNSGFHSH ASKDYRFLGF LQTVKEQEFI LKLWNRCLNP 480 ITWPEILRQV LIAAGFNSKQ RDFRRIPSIK DDNLLAGYGL RPGTLKGEMF SILSEQGNNG 540 LKVLELAKDF RVVKLHLTNS AKELELLIRS TLSSDITLFE KISPSTYRLR SNLLNCIGAG 600 DCQSDSEDSG SIDGASEESI TNSCDESELD SSKTSLALVK HKKHSTKKSD TLIEYNEIDE 660 MDSGEQWLLA LMESEYSELS IEEKMNTLVA LVDLTSAGSS TRVEARESVT AENLASIQHH 720 GGAKIKRSVA KQNNLVKPFW SNSESMDVVK EMDAPPGKHS VKWNGLKKND SRVPDASKTN 780 ATESIDEAGL DRHPLQSIYL GSDRRFNSYW LFLGPCNAKD PGHRRIYFES SEDGHWEVID 840 TKEALYSLLS VLDGRGSREA YLLAALMRLE GFLCEAMCNN ITSDNDMRHS TQSDRSSLGI 900 ISSDGSSPIS EVDNNLNLSD KVNASVPSSG AIVLEVKKVE EQRRKWDRLQ AFDAWIWNSF 960 YCNLNAVKHS KRSYVDTLVR CASCHDLYWR DEKHCKICHA TFELDFDLEE RYAVHVATCR 1020 EKEDNKFPKH KVLPTQLQSL KAALHAIEGV MPKEALVSAW TMSDHKLWIR RLRRTTSLLE 1080 LLQVLTDFVG ALNENWLSQC SIDSDCHTAV DEIIESFPTI PQTISAVALW LVKLDASFAP 1140 HLKGAHCEQT HGRTRNKKGS *

Sequence ? help Back to Top

Protein Sequence Length: 1161 aa Download sequence Send to blast

MGNSDEDGGG VGVCKMVFNN HGSITKRKTL LQLQTLEHLY SEDKYPSHKE LEDFALSLNL  60
TYKQVRGWFV ERRRKEKRET IETPTSPPIC YTNHLYHHSN PLPGSILQTN NQKQTMMHSV  120
DYILKKIFRK DGPPLGVTFD PLPLGAFHST TTTTGRRKKD LNSLAGQRNG PTCAQNQRMA  180
KKRKVSKSPI SQLEVNTKKS VSGNKHGMGK GLMTVWRATN AGARGYPMGV NTTDKYITDV  240
YFNSASANSR KPLQHEMRKK ESHKLTKKQG RAGNKLLERR KRAIVSSSKA DNPKKPHHAE  300
CKLALEGLRS QEYRNGTTKL VDDEELELRE LQAGPNPLTC SAHLASNTLH TCSLCKDLLA  360
RFPPQSVMMK QPLCVQPWGS LPELVKKLFK VFRFLYSCSD TLDICPFTLD EFAQAFHDKD  420
SLLLGRIHAT LLKLLFSDVG MAVNSGFHSH ASKDYRFLGF LQTVKEQEFI LKLWNRCLNP  480
ITWPEILRQV LIAAGFNSKQ RDFRRIPSIK DDNLLAGYGL RPGTLKGEMF SILSEQGNNG  540
LKVLELAKDF RVVKLHLTNS AKELELLIRS TLSSDITLFE KISPSTYRLR SNLLNCIGAG  600
DCQSDSEDSG SIDGASEESI TNSCDESELD SSKTSLALVK HKKHSTKKSD TLIEYNEIDE  660
MDSGEQWLLA LMESEYSELS IEEKMNTLVA LVDLTSAGSS TRVEARESVT AENLASIQHH  720
GGAKIKRSVA KQNNLVKPFW SNSESMDVVK EMDAPPGKHS VKWNGLKKND SRVPDASKTN  780
ATESIDEAGL DRHPLQSIYL GSDRRFNSYW LFLGPCNAKD PGHRRIYFES SEDGHWEVID  840
TKEALYSLLS VLDGRGSREA YLLAALMRLE GFLCEAMCNN ITSDNDMRHS TQSDRSSLGI  900
ISSDGSSPIS EVDNNLNLSD KVNASVPSSG AIVLEVKKVE EQRRKWDRLQ AFDAWIWNSF  960
YCNLNAVKHS KRSYVDTLVR CASCHDLYWR DEKHCKICHA TFELDFDLEE RYAVHVATCR  1020
EKEDNKFPKH KVLPTQLQSL KAALHAIEGV MPKEALVSAW TMSDHKLWIR RLRRTTSLLE  1080
LLQVLTDFVG ALNENWLSQC SIDSDCHTAV DEIIESFPTI PQTISAVALW LVKLDASFAP  1140
HLKGAHCEQT HGRTRNKKGS *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	76	RRRKEK
2	71	78	RRRKEKRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010274899.1	0.0	PREDICTED: homeobox-DDT domain protein RLT3 isoform X1
Refseq	XP_010274900.1	0.0	PREDICTED: homeobox-DDT domain protein RLT3 isoform X1
TrEMBL	A0A2G5CC21	0.0	A0A2G5CC21_AQUCA; Uncharacterized protein
STRING	Aquca_066_00010.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Aqcoe1G292900.1.p