PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G296300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 780aa    MW: 89642.3 Da    PI: 7.3498
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G296300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR126.12.8e-0887128141
               FAR1   1 kfYneYAkevGFsvrkskskkskrn.geitkrtfvCskegkr 41 
                        ++YneYA++vGFs+++++++k++r+ ++i+ +t++Cs+e + 
  Aqcoe1G296300.1.p  87 NYYNEYARTVGFSIKIKRTNKHRRDpEKIVLQTLCCSCEVEY 128
                        69**************9999885552778999*****98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-587127IPR004330FAR1 DNA binding domain
PfamPF105516.7E-32255349IPR018289MULE transposase domain
PROSITE profilePS5096610.188534572IPR007527Zinc finger, SWIM-type
PfamPF044341.1E-6547569IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-7547574IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 780 aa     Download sequence    Send to blast
MNRNAMSLSL QISYSNKSCI HKKDAEIKGC TLSEDSQEKN PIDVDASDNK NVKDTTSEIQ  60
GESAATLDEN LIPKIGLIFE NLKDAYNYYN EYARTVGFSI KIKRTNKHRR DPEKIVLQTL  120
CCSCEVEYTH ELVPPTCSYL LRSHRGVKKS QAGIMKKMHS SGLQPSDIYY YFCAEAGGAE  180
HVNFSQSDCN NLLQRGRIEI LKKGDAQCLL EYFKQKKQEN KHFYYNILTN EESEIHGIFF  240
CDALSRHDYE LFGDVICFDT TFRTNNYNLV CAPIVGVNNH GQTTIFGCGL LEGETSDAIV  300
WMFENLIEVM GEKKPSTIFT DQSMAILNTI ASIFPDAHHR LCIWHIFQNG AKHLAKVFAE  360
FDSFPQRFKE CIYEPETVEE FEEIWKALLD DYGLKDNKWL HGLYKLREKW AQVYAHAYFC  420
AGITTTQRSE SINKFLKAYF PSNTLLRAFV DQYTKAMTCR RQKEKEAETQ MRQTKPIFCS  480
NWSVEGEASK VYTGKIFNLF QEELKQIIDL RIILESGEGT VQIYNVEQLG KRRRTRKVTY  540
NHSDQSAQCT CQKFQFEGIL CSHVLKLFRD LDLGNLPTQH YLKRWTRSIT DEVVYDSYGE  600
VIPSDIDPKC TSRYSELSHI FQRLVVKGSK SESLFSIIKS KALEFELEVD TMAKNDEERE  660
KSSKKSSAAT QNHSIQNPDE EVELRDPPKK RARGESKTRK KSCLEKKPSK KKKDLKQSNG  720
SREQFGVRSQ VQDDASTLNQ STQQDNIFYS VGGMKEQNQT ITDDQNNQGL ARRLDFSDL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1688700KKRARGESKTRKK
2698712RKKSCLEKKPSKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026397296.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A200PMW30.0A0A200PMW3_9MAGN; FAR1 DNA binding domain
STRINGEMJ255100.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-115FAR1-related sequence 5