PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G300200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 759aa    MW: 87344.8 Da    PI: 8.4022
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G300200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1621.8e-1970159291
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                        fYneYAk  GFsvrk++++    + ++ +r+f Cs+ g+r+++ ++ ++++++ r  tr++C a l++  ++  ++w v ++++eH+H lap
  Aqcoe1G300200.1.p  70 FYNEYAKFKGFSVRKDHKTVI--KSKTCRRRFICSCAGQRANKWSNlQRRRKKARRLTRCDCPALLNIVYSEeVNTWIVLDFKSEHSHVLAP 159
                        9***************98777..55579**************99995667777999***********9999889**************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.7E-1770159IPR004330FAR1 DNA binding domain
PfamPF105516.7E-33275369IPR018289MULE transposase domain
PROSITE profilePS5096610.658553589IPR007527Zinc finger, SWIM-type
SMARTSM005751.0E-5564591IPR006564Zinc finger, PMZ-type
PfamPF044344.7E-6565587IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MSTYNVDEFV EEFSDDDSEA ESEIPRRRNI DLLCQVGVRL QQEIHEDMGQ FSDADILDAR  60
FDTDEEAYLF YNEYAKFKGF SVRKDHKTVI KSKTCRRRFI CSCAGQRANK WSNLQRRRKK  120
ARRLTRCDCP ALLNIVYSEE VNTWIVLDFK SEHSHVLAPT DGSQFLRSHR KVSVSNALLA  180
EGLYGLGVMD LIVARAGSHA AAGCTKRDLY NQMNRSRVER ILDGDANVVN AYMEDMSMND  240
PGFFKKHQVN EKQQLTKLFW SDSQSQEDYK LFGDVLLFDS TYRTNRYGMP LVVFAGVNNH  300
RHTVIFALAL MNTETIESYI WALEAFIAAM DNVAPKSVIT DGDAAIRSSI ETVLPNSKHR  360
LCVWHVVQNS LTNVRTQGFH KDFVDVMFCK GPPENFEKKW GELLTKFNNV AKKKWVHNIY  420
LKKEMWAEGY LREYFFAGCR SNQRCESINS VVRLCVKAGL TLIELVERLL IKVKYIRHRD  480
FEAEVNTMMT RSAQIPNLSR IGERAEALYT RAGYEYLYKQ LLHEPSYVVN ETYEDGVNIK  540
YLVNHHMYPN SPQTVEYMRD TDAYKCSCKL FERVGFICRH ILAVLKHTHV SQIPKSCILH  600
RWTRDAKSSS MTDVRTNSSS WMLGSGLRLN DLEDCARELF MWACESVQRC SRVKSHIAAF  660
DKGESEEVAQ GLNQTPILDN PMGVEEKRAS TPTHVGLPPD NITDPPLYRG KRVAKRKIWQ  720
RCTTRCGICL IVGHTRRTCP SNSFSHFLFL LLFVSFIV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EJ870.0A0A2G5EJ87_AQUCA; Uncharacterized protein
STRINGAquca_007_00263.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-84FAR1-related sequence 5