PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G305700.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 654aa MW: 76382.6 Da PI: 9.1158

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G305700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46.2	1.5e-14	6	86	8	91
FAR1 8 kevGFsvrkskskkskrn.geitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +vGF++++++++k++++ ++i+ +t++Cs+eg+ ++ ++ r++r+e r gC ak+++k++kd+k+e+ k+ +H+Hel+p Aqcoe1G305700.1.p 6 LQVGFNIKIKRTNKHRHDpEKIVLQTLCCSCEGTYTKVNTP----RKRREERRFGCLAKFEIKLNKDEKFELRKFIVDHTHELVP 86 689****999988655277999******9997766....999*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-11	6	86	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.4E-30	207	301	IPR018289	MULE transposase domain
SMART	SM00575	7.8E-5	486	513	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 654 aa Download sequence Send to blast
MCSWVLQVGF NIKIKRTNKH RHDPEKIVLQ TLCCSCEGTY TKVNTPRKRR EERRFGCLAK 60 FEIKLNKDEK FELRKFIVDH THELVPPTCL YLLRSHRGVK KSQAGIMKKI HSSGLQPSDI 120 YYYFCAEAGQ DEHVTFSQSD CNNLLQRGQI EIRKKGDAQC LLEYFKRKKQ ENKHFFYNIL 180 TNEESEICGI FFCDALSRRD YELFGDVICF DTTFRTNNYN LVCAPIVGVN NHGQTAIFGW 240 GLLEGETSDA IVWMFENFLE VMGGKKPSTI FTDQSMPISN AIVSIFLDAH HRLCIWHIFQ 300 NAAKHIAKVF AEFDKTVEEF EEIWKALLDD YGLGDNKWLH GLYKLREKWA QVYAHAYFCA 360 SITTTQRSES INKFLKAYFP SNTLLRAFVD QYTKAMTCRR QKEKEDETQM RQTKPIFCSN 420 WSVEREASKV YTRKIFNLFQ EELKQIIDLR IILEGGEGTV QIYNVKQLGK RRRTRKVTYN 480 HSDQSVQCTS RKFQFERILC SHVLKLFRDL DLGSLPTQYY LKRWFRSITD EVVYDSYGEV 540 IPSDIDPKCT SRYSELSHIF QRLVVKGSKS YSLFSIIKSK ALEFEVEVDT MAKNDEEREK 600 TSKKSSVAPQ NHSIQNPDEE VELCDPPKKR ARGESKTRKK ICLEKKPSKK KRI*

Sequence ? help Back to Top

Protein Sequence Length: 654 aa Download sequence Send to blast

MCSWVLQVGF NIKIKRTNKH RHDPEKIVLQ TLCCSCEGTY TKVNTPRKRR EERRFGCLAK  60
FEIKLNKDEK FELRKFIVDH THELVPPTCL YLLRSHRGVK KSQAGIMKKI HSSGLQPSDI  120
YYYFCAEAGQ DEHVTFSQSD CNNLLQRGQI EIRKKGDAQC LLEYFKRKKQ ENKHFFYNIL  180
TNEESEICGI FFCDALSRRD YELFGDVICF DTTFRTNNYN LVCAPIVGVN NHGQTAIFGW  240
GLLEGETSDA IVWMFENFLE VMGGKKPSTI FTDQSMPISN AIVSIFLDAH HRLCIWHIFQ  300
NAAKHIAKVF AEFDKTVEEF EEIWKALLDD YGLGDNKWLH GLYKLREKWA QVYAHAYFCA  360
SITTTQRSES INKFLKAYFP SNTLLRAFVD QYTKAMTCRR QKEKEDETQM RQTKPIFCSN  420
WSVEREASKV YTRKIFNLFQ EELKQIIDLR IILEGGEGTV QIYNVKQLGK RRRTRKVTYN  480
HSDQSVQCTS RKFQFERILC SHVLKLFRDL DLGSLPTQYY LKRWFRSITD EVVYDSYGEV  540
IPSDIDPKCT SRYSELSHIF QRLVVKGSKS YSLFSIIKSK ALEFEVEVDT MAKNDEEREK  600
TSKKSSVAPQ NHSIQNPDEE VELCDPPKKR ARGESKTRKK ICLEKKPSKK KRI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	627	639	KKRARGESKTRKK
2	637	651	RKKICLEKKPSKKKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026397296.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A200PMW3	0.0	A0A200PMW3_9MAGN; FAR1 DNA binding domain
STRING	EMJ25510	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-109	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Aqcoe1G305700.1.p