PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G306000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GRAS
Protein Properties Length: 552aa    MW: 61402.1 Da    PI: 5.1505
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G306000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS337.42.5e-1031715481374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPi 90 
                        lv+l+l+cAeav  +d++la+ +L+++  la+p gd++qR+ ++f+ +L++rl+  v ++  ++++ + + +     +++ al+ +++++P+
  Aqcoe1G306000.1.p 171 LVHLMLACAEAVGCRDTRLATLVLNQVWALANPCGDSLQRVCFCFAMGLKSRLSL-VVGTNGIFNSADIPLMGisRPDKIDALQSLYQTTPY 261
                        689**************************************************98.55555555555555444448899************* PP

               GRAS  91 lkfshltaNqaIleavege..ervHiiDfdisq.Gl.QWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvp 175
                        + f++++aN+aI +a +g+  +++HiiD++++  Gl QWp+L ++LasR egpp lRiT + ++  +   +   l++  + L + A++lg++
  Aqcoe1G306000.1.p 262 VAFGFMAANEAICQASQGKefDCIHIIDLGMELlGLhQWPSLVRKLASRLEGPPVLRITMIINEGDKhpnHYSDLQANMKALVDDASSLGMT 353
                        ******************9899********9853435************************997666677788888888999999******* PP

               GRAS 176 fefnvlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                        ++ ++++++ + + ++ e+L++++gE l+Vn++++lh+ ++es  + +    +L+++k+lsP +v+vveq+a+hn++ Fl rfle+l+yysa
  Aqcoe1G306000.1.p 354 LQLHIVTETvTAALFTCEKLNLREGELLIVNSIMHLHKYVKESRGSLK---IILQAIKKLSPALVTVVEQDANHNGPFFLGRFLESLHYYSA 442
                        *****9666688889************************987765555...7**************************************** PP

               GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                        +fdslea+lpr+s +r k+Er+ +g++i+n+va eg +r+erhe++ +Wr++l++aGF+ v l+   ++q++++l+ ++ dgy++  e+g+l
  Aqcoe1G306000.1.p 443 IFDSLEASLPRHSAQRFKIERMHFGEQIRNIVAYEGPDRIERHERADQWRRQLGRAGFQVVGLK--CMSQIRMMLSVYGCDGYSLATEKGCL 532
                        *************************************************************995..89************************ PP

               GRAS 359 vlgWkdrpLvsvSaWr 374
                        +lgWk+rp++ +SaWr
  Aqcoe1G306000.1.p 533 LLGWKGRPIMLASAWR 548
                        ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.342145530IPR005202Transcription factor GRAS
PfamPF035148.6E-101171548IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MADMNGWLSF LMDESNLNQD MAIRRFCAAR TEQEQKGDSM EETTNKLDAL WSPDTTSSTT  60
AQLGSSEEEF VDSFFNIDCC NKEENHKSST EEHTFPCQEA TFPDDDYLDT LLAMVNDIER  120
DSASSPMINQ EGDNANDLLV ASPDMLPLPS AINVEQVHQG SNGPADQGLH LVHLMLACAE  180
AVGCRDTRLA TLVLNQVWAL ANPCGDSLQR VCFCFAMGLK SRLSLVVGTN GIFNSADIPL  240
MGISRPDKID ALQSLYQTTP YVAFGFMAAN EAICQASQGK EFDCIHIIDL GMELLGLHQW  300
PSLVRKLASR LEGPPVLRIT MIINEGDKHP NHYSDLQANM KALVDDASSL GMTLQLHIVT  360
ETVTAALFTC EKLNLREGEL LIVNSIMHLH KYVKESRGSL KIILQAIKKL SPALVTVVEQ  420
DANHNGPFFL GRFLESLHYY SAIFDSLEAS LPRHSAQRFK IERMHFGEQI RNIVAYEGPD  480
RIERHERADQ WRRQLGRAGF QVVGLKCMSQ IRMMLSVYGC DGYSLATEKG CLLLGWKGRP  540
IMLASAWRVH V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-5517854725377Protein SCARECROW
5b3h_D3e-5517854725377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006422278.20.0DELLA protein RGL1
RefseqXP_006493798.10.0DELLA protein RGL1-like
TrEMBLA0A2G5EH000.0A0A2G5EH00_AQUCA; Uncharacterized protein
STRINGAquca_008_00025.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-73RGA-like 1