PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G309700.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Protein Properties

Length: 903aa MW: 98839.9 Da PI: 8.1281

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G309700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.2	2.7e-17	356	455	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k l+ sd+++ grlvlpk++ae++ +++ e++ l+++d +g++W + +++ +++s++yvl+ G ++ +L++gD+v+F++++ Aqcoe1G309700.1.p 356 FEKMLSASDAGRIGRLVLPKRCAEAYfpAISQSEGIPLKVQDAKGQEWVLHFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-P 445 89************************777778899***********99899999999.*******************887.8 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 +++l ++ ++ Aqcoe1G309700.1.p 446 GGKLAIGCRK 455 8888888775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.6E-26	349	456	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	9.03E-18	353	449	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.64E-21	354	455	No hit	No description
SMART	SM01019	9.1E-18	356	456	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.4E-14	356	455	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.405	356	457	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	12.825	584	634	IPR011124	Zinc finger, CW-type
Pfam	PF07496	2.0E-9	589	631	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 903 aa Download sequence Send to blast
MSSLITKRSS FCYNLNCKGD AAAAPPEGQQ KLIKRAWRLH NGDFAHLCLP CSAVFEEGKF 60 CETFHLDAAG WRSCDSCEKR VHCGCIVSIN SYLLLDAGGV ECMPCAWKNI IMAPNQIWPS 120 SSSLSHSNRQ NNLSVKNWNQ SAGPCAISGH RQQQLNMLNT SAVLSDLNPT MQYDVDGLRK 180 ISRDYSAPDL EKKSLGDPSD KVNNCNLFMM DSLTNGNGVV DMLAASHSLR WNEMSLNSLQ 240 GIAYRASLQS SSSKEDPSIP AIARVPYSLR NEANVPEDVS LTQSRHQTIS TPMANQSNVN 300 IQTGAKSCGE SPVRKGRHPV DTRGRSQLLP RYSPKIIDPE LQKISEASNS VITPLFEKML 360 SASDAGRIGR LVLPKRCAEA YFPAISQSEG IPLKVQDAKG QEWVLHFRFW PNNNSRMYVL 420 EGVTPCIQSM QLQAGDTVTF SRIDPGGKLA IGCRKAVRIS PSDQDKLSLK TVGDVSKISE 480 VNEADPAGSW PENGKSGYAS KDRAGSKSRP RKRRGSSLGF KSKRLSIDNE DLIELKLTWE 540 EAQGLLRPPP DYVPNVMVID GHEFEEYEEA PLLGKPTICG TDQVGEMFQW AQCEDCSKWR 600 KVPINANLPF GWTCSANLWD PKRSSCSSAQ EAKPKQLEDV VSSRKTASAS KKTKPVRKHM 660 DADKVSEGLN TPVEHSPILE DDALPSVKTT TRHPRHRFGC TCIVCIQSPS GKGLKHKDSC 720 TCNVCLTVRR RRLSLLKHFS EKDMESARQK LEQLKLPENP TMKDDVQKVV YSDGADSNPK 780 LMADENSNDF PRENPSSPIG QIDLNILLER EDGPSSISGS GNMVRLQSGT HKLYPVLHGS 840 TGLSGDVDLA LNERLPGEGR CNGNGARGEL GTVVQHATSP GASNGTPIPL CISMSVIVPT 900 SS*

Sequence ? help Back to Top

Protein Sequence Length: 903 aa Download sequence Send to blast

MSSLITKRSS FCYNLNCKGD AAAAPPEGQQ KLIKRAWRLH NGDFAHLCLP CSAVFEEGKF  60
CETFHLDAAG WRSCDSCEKR VHCGCIVSIN SYLLLDAGGV ECMPCAWKNI IMAPNQIWPS  120
SSSLSHSNRQ NNLSVKNWNQ SAGPCAISGH RQQQLNMLNT SAVLSDLNPT MQYDVDGLRK  180
ISRDYSAPDL EKKSLGDPSD KVNNCNLFMM DSLTNGNGVV DMLAASHSLR WNEMSLNSLQ  240
GIAYRASLQS SSSKEDPSIP AIARVPYSLR NEANVPEDVS LTQSRHQTIS TPMANQSNVN  300
IQTGAKSCGE SPVRKGRHPV DTRGRSQLLP RYSPKIIDPE LQKISEASNS VITPLFEKML  360
SASDAGRIGR LVLPKRCAEA YFPAISQSEG IPLKVQDAKG QEWVLHFRFW PNNNSRMYVL  420
EGVTPCIQSM QLQAGDTVTF SRIDPGGKLA IGCRKAVRIS PSDQDKLSLK TVGDVSKISE  480
VNEADPAGSW PENGKSGYAS KDRAGSKSRP RKRRGSSLGF KSKRLSIDNE DLIELKLTWE  540
EAQGLLRPPP DYVPNVMVID GHEFEEYEEA PLLGKPTICG TDQVGEMFQW AQCEDCSKWR  600
KVPINANLPF GWTCSANLWD PKRSSCSSAQ EAKPKQLEDV VSSRKTASAS KKTKPVRKHM  660
DADKVSEGLN TPVEHSPILE DDALPSVKTT TRHPRHRFGC TCIVCIQSPS GKGLKHKDSC  720
TCNVCLTVRR RRLSLLKHFS EKDMESARQK LEQLKLPENP TMKDDVQKVV YSDGADSNPK  780
LMADENSNDF PRENPSSPIG QIDLNILLER EDGPSSISGS GNMVRLQSGT HKLYPVLHGS  840
TGLSGDVDLA LNERLPGEGR CNGNGARGEL GTVVQHATSP GASNGTPIPL CISMSVIVPT  900
SS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	9e-62	333	456	1	124	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010268825.1	0.0	PREDICTED: B3 domain-containing protein Os07g0563300-like
TrEMBL	A0A2G5EGR0	0.0	A0A2G5EGR0_AQUCA; Uncharacterized protein
STRING	Aquca_008_00005.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-127	HSI2-like 1

Link Out ? help Back to Top
Phytozome	Aqcoe1G309700.1.p