PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G316100.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

C2H2

Protein Properties

Length: 112aa MW: 12429.8 Da PI: 9.1912

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G316100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.4e-06	72	94	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+ksF ++ +L+ H ++H Aqcoe1G316100.1.p 72 YKCSVCNKSFLNQRSLRGHVSKH 94 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	7.8E-7	69	96	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.82E-7	69	98	No hit	No description
SMART	SM00355	6.3E-4	72	94	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.741	72	99	IPR007087	Zinc finger, C2H2
Pfam	PF12907	7.9E-4	73	105	No hit	No description
PROSITE pattern	PS00028	0	74	94	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
MENQQDDSYR SYLSSPNKVI DSPDHLDQIL PPEPPVLDDS STQADISTMA PSNTITDQSN 60 NPSLGSSTSK PYKCSVCNKS FLNQRSLRGH VSKHAKNNLN KVFPDRKRRK L*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G5CH98	1e-74	A0A2G5CH98_AQUCA; Uncharacterized protein
STRING	Aquca_054_00021.1	2e-75	(Aquilegia coerulea)

Link Out ? help Back to Top
Phytozome	Aqcoe1G316100.1.p