PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G321300.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

NAC

Protein Properties

Length: 344aa MW: 38230.8 Da PI: 9.3149

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G321300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.3	2.9e-53	16	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppG+rFhPtdeelvv+yLkkk+++++l++ ++i+evd+yk++Pw+Lp k++ +++ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++ Aqcoe1G321300.1.p 16 LPPGYRFHPTDEELVVHYLKKKIASDPLPV-SIIAEVDLYKFDPWELPGKATFGDQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPI 106 79**************************.89***********888899************************************ PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 l++ +++++g+kk Lvfy+g+ pkg k++W+mheyrl Aqcoe1G321300.1.p 107 LTAgGTQKIGVKKALVFYRGKPPKGIKSNWIMHEYRL 143 9977788**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-65	9	173	IPR003441	NAC domain
PROSITE profile	PS51005	62.681	16	173	IPR003441	NAC domain
Pfam	PF02365	4.6E-28	17	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MMESTDSSSG SQQPQLPPGY RFHPTDEELV VHYLKKKIAS DPLPVSIIAE VDLYKFDPWE 60 LPGKATFGDQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPILTAG GTQKIGVKKA 120 LVFYRGKPPK GIKSNWIMHE YRLIDNTGIM KPPGTKKNSS RLDDWVLCRI YKKNNSQRSI 180 ECDKDVAIDN GFSIMDRQHN LQAQAAKATN CGLYLENNET FFEGLLSDSV NNNNTLSHLA 240 SSSSKPDVSI MVPPSASTML PLRRTLQSPY WNEAGSESSD KRFQTNQSSS SGGGSIQSNS 300 VVNMLNQIPQ QASPFHHQVL LGSLGDGVYR QQYQQVSGIN WNS*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MMESTDSSSG SQQPQLPPGY RFHPTDEELV VHYLKKKIAS DPLPVSIIAE VDLYKFDPWE  60
LPGKATFGDQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPILTAG GTQKIGVKKA  120
LVFYRGKPPK GIKSNWIMHE YRLIDNTGIM KPPGTKKNSS RLDDWVLCRI YKKNNSQRSI  180
ECDKDVAIDN GFSIMDRQHN LQAQAAKATN CGLYLENNET FFEGLLSDSV NNNNTLSHLA  240
SSSSKPDVSI MVPPSASTML PLRRTLQSPY WNEAGSESSD KRFQTNQSSS SGGGSIQSNS  300
VVNMLNQIPQ QASPFHHQVL LGSLGDGVYR QQYQQVSGIN WNS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-75	13	176	14	168	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-75	13	176	14	168	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-75	13	176	14	168	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-75	13	176	14	168	NO APICAL MERISTEM PROTEIN
3swm_A	4e-75	13	176	17	171	NAC domain-containing protein 19
3swm_B	4e-75	13	176	17	171	NAC domain-containing protein 19
3swm_C	4e-75	13	176	17	171	NAC domain-containing protein 19
3swm_D	4e-75	13	176	17	171	NAC domain-containing protein 19
3swp_A	4e-75	13	176	17	171	NAC domain-containing protein 19
3swp_B	4e-75	13	176	17	171	NAC domain-containing protein 19
3swp_C	4e-75	13	176	17	171	NAC domain-containing protein 19
3swp_D	4e-75	13	176	17	171	NAC domain-containing protein 19
4dul_A	3e-75	13	176	14	168	NAC domain-containing protein 19
4dul_B	3e-75	13	176	14	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006841705.1	1e-154	NAC transcription factor 56
Swissprot	Q9LD44	1e-107	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A2G5DB67	0.0	A0A2G5DB67_AQUCA; Uncharacterized protein
STRING	Aquca_024_00081.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-107	NAC domain containing protein 2

Link Out ? help Back to Top
Phytozome	Aqcoe1G321300.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]