PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G330100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 780aa    MW: 89789.1 Da    PI: 6.3151
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G330100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1101.39.5e-3278168290
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        fYn+YA++vGFs+r++ s++s+r+g i++r fvC keg+r +++k+  ++k+rr+ra+tr+gCka+l +k +++gkw vt++e+eHnHel+
  Aqcoe1G330100.1.p  78 FYNSYARRVGFSTRVNMSRRSRRDGAIIQRSFVCAKEGFRVDREKTidETKTRRPRAVTRVGCKAMLALKIHDSGKWFVTSFEKEHNHELV 168
                        9******************************************999989999*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-2978168IPR004330FAR1 DNA binding domain
PfamPF105512.1E-32290382IPR018289MULE transposase domain
PfamPF044347.0E-12557602IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.695569605IPR007527Zinc finger, SWIM-type
SMARTSM005752.5E-8580607IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 780 aa     Download sequence    Send to blast
MEFEPLNMEN DTIDFDMGFE DDDGIDIEHP VDDDEMYDTS TTTTTTLDRG DFYIPEGDTN  60
LEPYVGMEFE SEEAAKAFYN SYARRVGFST RVNMSRRSRR DGAIIQRSFV CAKEGFRVDR  120
EKTIDETKTR RPRAVTRVGC KAMLALKIHD SGKWFVTSFE KEHNHELVRQ DKVHSLRSHR  180
HVSGTAKSLI DTLQAAGMGP SGIMSALIRE YGGITHVGFT ERDCRNYMRS NRQKTLGGDT  240
QILLDYLRQK HADNPAFFYA VQGDEDQCMS NIFWADQSSR TNYIHFGDTV SFDATYRSNR  300
YRLPFAPFTG VNHHGHPVLF GCAFLVNESE DSFIWLFKTW LTAMSGRAPV SITTDHDRVI  360
RSAITQVLPE TRHRFCKWHI FKEGQEKLAP VYLENPNFEA EFHKCVNLTE SIEEFESCWL  420
SLIDTYNVKE NGWLQVIYDA RKQWVPVYLR DTFFAEMSIT QRSDSINSYF DGYVNASTSL  480
QTFIKQYEKA LESRHEKEVK ADYETMSTIP TLKTPSPMEK QAAELYTKKL FTKFQEELVE  540
TLTFMATKMD DDGVTKYRVA KYGDDFRAYI VDFNVIEMKA TCSCQMFEFS GLLCRHVLTV  600
FRVSNVLTLP PQYILKRWTR NAKSGVVLED RPNDVLNNYR ESHTVRYNSL RHEALKFVDE  660
GAKTIDIYNV AMRALQDAAK KVALAKKNGG KLSVVNGSSQ EDGFTDGIHS NDGHQWALVQ  720
HQSPDEKDKK MDDLSYELDR ANRKCEVYRA NLLSILKDIE EQKLQLNVKV QNIKLGMKD*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010266300.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1U8ATU20.0A0A1U8ATU2_NELNU; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_010266300.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]