PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G339000.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 585aa MW: 69192.4 Da PI: 9.4055

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G339000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.9	1.3e-21	13	98	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn +A + GFs+r+++s+ + +++ +f Cskeg+++e+++ +r+++r+gC+a++kvk+ k+++wev +lel+HnH ++ Aqcoe1G339000.1.p 13 NFYNCHAMQKGFSTRIKSSYINPKTKDNQYVWFSCSKEGFKDEKSEV----IYKRPNSRVGCNAHMKVKLAKSNTWEVVSLELDHNHGCS 98 6*******************999999**********98877....8999******************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.2E-18	13	98	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.4E-33	197	289	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.605	486	522	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0016	497	524	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence Send to blast
MGMSFPTYEE AKNFYNCHAM QKGFSTRIKS SYINPKTKDN QYVWFSCSKE GFKDEKSEVI 60 YKRPNSRVGC NAHMKVKLAK SNTWEVVSLE LDHNHGCSPS KAYRFRSHKH MESGSKKRLE 120 LNCDARIRLN KSFHSIVVNV GGIIISKKEM QKYFTWMQQK NSNFFYVVDF DNEGRQRNVF 180 WPDGRSRATY GYFGDAITFD TTYLTNRYDL KFAPFVRVNH HGQSVLFGCG LLADETSKSF 240 EWLFKAWLNA LSEYSPNVII TYQNKAMEKA IKRVFPNSHH RWCLWHIMNK IADKLGSYKE 300 YKSIKKAMKN VVYESLRIDE FEESWKTMIE GYTLQENKWL TKLYDSRYKW VPVFFKNVFF 360 FFFFVGMYTI QRSESMNAFF DGYVHSRTCL KEFDDQYELA LKDKFEKETQ ADFVTFNIAP 420 HLKTSCIFER QIAKVYTKNM FEKFQAEVYA MVACSRSEVG VVGEIKTYAI KERVIDKRGI 480 LHSKVYDFIF NEAKTEVSCI CRLFEYKEIL CRHTLYVLNE FVDEIPCQYI LPRWRKDFKR 540 IYVGSRGYHN VIFDNPVQRY DILFPHALQI LEERVLSNPS SSLL*

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence Send to blast

MGMSFPTYEE AKNFYNCHAM QKGFSTRIKS SYINPKTKDN QYVWFSCSKE GFKDEKSEVI  60
YKRPNSRVGC NAHMKVKLAK SNTWEVVSLE LDHNHGCSPS KAYRFRSHKH MESGSKKRLE  120
LNCDARIRLN KSFHSIVVNV GGIIISKKEM QKYFTWMQQK NSNFFYVVDF DNEGRQRNVF  180
WPDGRSRATY GYFGDAITFD TTYLTNRYDL KFAPFVRVNH HGQSVLFGCG LLADETSKSF  240
EWLFKAWLNA LSEYSPNVII TYQNKAMEKA IKRVFPNSHH RWCLWHIMNK IADKLGSYKE  300
YKSIKKAMKN VVYESLRIDE FEESWKTMIE GYTLQENKWL TKLYDSRYKW VPVFFKNVFF  360
FFFFVGMYTI QRSESMNAFF DGYVHSRTCL KEFDDQYELA LKDKFEKETQ ADFVTFNIAP  420
HLKTSCIFER QIAKVYTKNM FEKFQAEVYA MVACSRSEVG VVGEIKTYAI KERVIDKRGI  480
LHSKVYDFIF NEAKTEVSCI CRLFEYKEIL CRHTLYVLNE FVDEIPCQYI LPRWRKDFKR  540
IYVGSRGYHN VIFDNPVQRY DILFPHALQI LEERVLSNPS SSLL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G5F5P7	0.0	A0A2G5F5P7_AQUCA; Uncharacterized protein
STRING	Aquca_002_00987.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-138	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Aqcoe1G339000.1.p