PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G342800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family M-type_MADS
Protein Properties Length: 71aa    MW: 8401.91 Da    PI: 11.5696
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G342800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.43.3e-12931123
                       S---SHHHHHHHHHHHHHHHHHH CS
             SRF-TF  1 krienksnrqvtfskRrngilKK 23
                       krien++nrqvtfskRrng++KK
  Aqcoe1G342800.1.p  9 KRIENTTNRQVTFSKRRNGLIKK 31
                       79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.871138IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-13132IPR002100Transcription factor, MADS-box
SMARTSM004328.6E-13152IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-13323IPR002100Transcription factor, MADS-box
PfamPF003194.9E-101031IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-132338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MGRVKLQIKR IENTTNRQVT FSKRRNGLIK KEVMVVVMVF LLHYSMLVLA KEDQTTAPSQ  60
RERERERERK *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5CZU73e-42A0A2G5CZU7_AQUCA; Uncharacterized protein
STRINGAquca_032_00047.15e-43(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.19e-16AGAMOUS-like 66