PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G347200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 424aa    MW: 48841 Da    PI: 10.0137
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G347200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.15.8e-1816106190
               FAR1   1 kfYneYAkevGFsvrkskskkskrn.geitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                        ++Y+eY+++ GF  r+++s k++   +   +  fvCs+eg++++++++ +++ r++++ r++Cka+++v k+k ++ + +t +e++HnH+l+
  Aqcoe1G347200.1.p  16 NYYREYGRQEGFCGRTRTSGKKQWGvNAASNCLFVCSREGTHDKKEDS-NSKPRNTSTVRCQCKANMRVAKRKyEELYDLTMFENNHNHNLV 106
                        69************9999988854414567789**********99998.99999*****************999****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-1416106IPR004330FAR1 DNA binding domain
PfamPF105516.8E-27222305IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MPYVGMTFKS LDDAKNYYRE YGRQEGFCGR TRTSGKKQWG VNAASNCLFV CSREGTHDKK  60
EDSNSKPRNT STVRCQCKAN MRVAKRKYEE LYDLTMFENN HNHNLVTPSK RMQMKVNRNM  120
LQAAKNLTKT FHAEGLPVGK VHCVFGGDKI GFNAKDCHNH LGATRKKAKE GDATTALAYF  180
QQKSAEGPQF YYGIQTDNKG RAVNFFGTTN VTKLMSNHFV PVSYQMPLAP FTGVNHHLQS  240
IQFGCALLLD ETEEMFVWLF ETFLKAMSGR PPSSILIDQD RAMTAAVAKV FPTTRHRHCL  300
WHIMMKFGKK LAQVYFKKPK FKKEIKKCIR ESYKIDDFEA KWNKIVPKYK VENNEWLKER  360
YEARKTWVPV YHLNTFYAGM NTTGRSESMN AFYDNFISST TCLSDFVYAH EKSLERIAKT  420
ERV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007208966.21e-156protein FAR1-RELATED SEQUENCE 5
RefseqXP_008219733.21e-155PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLM5WTQ71e-155M5WTQ7_PRUPE; Uncharacterized protein
STRINGEMJ101651e-155(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-87FAR1-related sequence 5