PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G355200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 801aa    MW: 91642.8 Da    PI: 8.551
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G355200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.51.4e-2098187291
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                        fYneYAk  GFsvrk++++    +g++ +r+f Cs+ g+r+++ ++ ++++++ r  tr++C a l++  ++  ++w v ++++eHnH lap
  Aqcoe1G355200.1.p  98 FYNEYAKFKGFSVRKDHKTVI--KGKTCRRRFICSCAGQRANKWSNlQRRRKKARRLTRCDCPALLNIVYSEeVNTWIVLDFKSEHNHVLAP 187
                        9**************997766..8889***************99995667777999***********9999889**************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-1898187IPR004330FAR1 DNA binding domain
PfamPF105511.1E-32308402IPR018289MULE transposase domain
PROSITE profilePS5096610.287541573IPR007527Zinc finger, SWIM-type
PfamPF044341.4E-6545571IPR007527Zinc finger, SWIM-type
SMARTSM005751.0E-5548575IPR006564Zinc finger, PMZ-type
Gene3DG3DSA:4.10.60.107.2E-6705777IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 801 aa     Download sequence    Send to blast
MPYTNINDLV VLKGNNFSHW SYCSRYHIMS TYNVDEFVEE FSDDDSEAES EIPRRRNIDL  60
LCQVGVRLQQ EIHEDMGQFS DADILDARFD TDEEAYLFYN EYAKFKGFSV RKDHKTVIKG  120
KTCRRRFICS CAGQRANKWS NLQRRRKKAR RLTRCDCPAL LNIVYSEEVN TWIVLDFKSE  180
HNHVLAPTDG SQFLRSHRKV SVSNALLAEG LYGLGVSKKK VMDLIVARAS SHAAAGCTKR  240
DLYNQMNRSR VERILDGDAN VGNAYMEDMS MNDPGFFKKH QVNEKQQLTK LFWSDSQSQE  300
DYKLFGDVLL FDSTYRTNRY SMPLVVFAGV NNHRHTVIFA LALMNTETIE SYIWALEAFI  360
AAMDNVAPKS VITDGDAAIC SSIETVLPNS KHRLCVWHVV QNSLTNVRTQ GFHKDFVDVM  420
FCKGPPENFE KKWGELLTKF NNVAKKKWVH NIYLKKEMWA EGYLREYFFV GCRSNQRCES  480
INSVVRLCVK AGLTLIELVE RLLIKVKYIR HRDFEAEVNT MMTRSAQIPN LSRIGERAEA  540
LSTRADAYKC SCKLFERVGF ICRHILAVLK HTHVSQIPKS CILHRWTRDA KSSSMTDVRT  600
NSSSWMLGSG LRLNDLEDCA RELFMWACES VQRCSRVKSH IAAFDKGESE EVAQGLNQTP  660
ILDNPMGVEE KRASTPTHVG LPPDNITDPP LYRGKRVAKR KIWQRCTTRC GICLIVGHTR  720
RTCPSETDLV DNMTETGETM GVDADVEKEL NVRRTFTCSL CKTVGHRKNA ASCPMRQQSK  780
SVCFDCHSLL LRTTAFERLS *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EJ870.0A0A2G5EJ87_AQUCA; Uncharacterized protein
STRINGAquca_007_00263.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-76FAR1-related sequence 5