PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G355700.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 733aa    MW: 84980.4 Da    PI: 6.4043
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G355700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR121.76.7e-07141233790
               FAR1   7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkek......dgkwevtkleleHnHe 88 
                        A+e+G +v+++ks +   +g++ +  + C + gk +++k++    ++ ++r+r++   +C++ ++++  +      +++w+v+     HnH+
  Aqcoe1G355700.2.p 141 AREAGCTVVIKKSDHA-VSGRTPRLFLGCERGGKFRTHKRTeeneDDPKKRKRKSGTKKCDCPFVLRGIHlngvgaSDRWKVSVDCGRHNHP 231
                        8999*******99998.78889999********988877776777444555555555555555554433332366899************** PP

               FAR1  89 la 90 
                        la
  Aqcoe1G355700.2.p 232 LA 233
                        97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.8E-5141233IPR004330FAR1 DNA binding domain
PfamPF105511.5E-21347440IPR018289MULE transposase domain
PROSITE profilePS509668.098606638IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MEENTTEETI ENENVEETVK NEEKIVNVEE TTTTIDNDWQ TMEISPFLEQ SQRICNITLE  60
NMESSIFDVA NSDNHHQDFE NNNFGTPSMV LSQSEHSTNE KDPKSDYVRS ELLNIDLTDH  120
FTTDKVFESR EELIRWAGRT AREAGCTVVI KKSDHAVSGR TPRLFLGCER GGKFRTHKRT  180
EENEDDPKKR KRKSGTKKCD CPFVLRGIHL NGVGASDRWK VSVDCGRHNH PLATDIEGHT  240
YGGRLTPEEE KVLFEMTISG VKPKQVLNLI KERDPNNASK LQHIYNARAK LRSVEKNGKS  300
QMQQLMQLLD ENDYIEWNRR DHEGKSVTGL FWAHPESVQL LKCFPYVLVM DSTNKTNNYR  360
WPVFEVVGVT STMISFSVCF ALFERDREDN YLWALERLRS LLDENTLPSV IVTDGEIPLI  420
NSVEKIFPDA KRLLCQWHIQ MSVLAKAREF LDENDCKRFI DNWNDLMLSS TANKYKIQLE  480
RLERNFSDFP KVLHFIKETW LPHKEFLVSA WTDRYMHLGC TTTSRVENAH AKLKRHIGKC  540
SMFDFVGLWK VMHLMINEQI TEIRVSFERS LNSVKHEHRI LILKEVRGYV SREAIDLILS  600
ERKHAFSMGL DADACMCILH STHGLPCAHE IAIYDHDKCH IPLSSIHSFW KKLSGIPTLR  660
DRGDLDNYPE FQMFVKHYEE SDDVRKKYLL KKLKELADSA TSWLVEPQED IEIEDQPKGS  720
KLRKLLQIES SS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187192KKRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026404712.10.0PKS-NRPS hybrid synthetase CHGG_01239-like isoform X1
RefseqXP_026404714.10.0PKS-NRPS hybrid synthetase CHGG_01239-like isoform X2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-14FAR1-related sequence 5