PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G355700.3.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 645aa MW: 74784.5 Da PI: 7.8709

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G355700.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	21.9	5.6e-07	53	145	7	90
FAR1 7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkek......dgkwevtkleleHnHe 88 A+e+G +v+++ks + +g++ + + C + gk +++k++ ++ ++r+r++ +C++ ++++ + +++w+v+ HnH+ Aqcoe1G355700.3.p 53 AREAGCTVVIKKSDHA-VSGRTPRLFLGCERGGKFRTHKRTeeneDDPKKRKRKSGTKKCDCPFVLRGIHlngvgaSDRWKVSVDCGRHNHP 143 8999*****99998.78889999****988877776777444555555555555555554433332366899************ PP FAR1 89 la 90 la Aqcoe1G355700.3.p 144 LA 145 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.8E-5	53	145	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-21	259	352	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.098	518	550	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 645 aa Download sequence Send to blast
MVLSQSEHST NEKDPKSDYV RSELLNIDLT DHFTTDKVFE SREELIRWAG RTAREAGCTV 60 VIKKSDHAVS GRTPRLFLGC ERGGKFRTHK RTEENEDDPK KRKRKSGTKK CDCPFVLRGI 120 HLNGVGASDR WKVSVDCGRH NHPLATDIEG HTYGGRLTPE EEKVLFEMTI SGVKPKQVLN 180 LIKERDPNNA SKLQHIYNAR AKLRSVEKNG KSQMQQLMQL LDENDYIEWN RRDHEGKSVT 240 GLFWAHPESV QLLKCFPYVL VMDSTNKTNN YRWPVFEVVG VTSTMISFSV CFALFERDRE 300 DNYLWALERL RSLLDENTLP SVIVTDGEIP LINSVEKIFP DAKRLLCQWH IQMSVLAKAR 360 EFLDENDCKR FIDNWNDLML SSTANKYKIQ LERLERNFSD FPKVLHFIKE TWLPHKEFLV 420 SAWTDRYMHL GCTTTSRVEN AHAKLKRHIG KCSMFDFVGL WKVMHLMINE QITEIRVSFE 480 RSLNSVKHEH RILILKEVRG YVSREAIDLI LSERKHAFSM GLDADACMCI LHSTHGLPCA 540 HEIAIYDHDK CHIPLSSIHS FWKKLSGIPT LRDRGDLDNY PEFQMFVKHY EESDDVRKKY 600 LLKKLKELAD SATSWLVEPQ EDIEIEDQPK GSKLRKLLQI ESSS*

Sequence ? help Back to Top

Protein Sequence Length: 645 aa Download sequence Send to blast

MVLSQSEHST NEKDPKSDYV RSELLNIDLT DHFTTDKVFE SREELIRWAG RTAREAGCTV  60
VIKKSDHAVS GRTPRLFLGC ERGGKFRTHK RTEENEDDPK KRKRKSGTKK CDCPFVLRGI  120
HLNGVGASDR WKVSVDCGRH NHPLATDIEG HTYGGRLTPE EEKVLFEMTI SGVKPKQVLN  180
LIKERDPNNA SKLQHIYNAR AKLRSVEKNG KSQMQQLMQL LDENDYIEWN RRDHEGKSVT  240
GLFWAHPESV QLLKCFPYVL VMDSTNKTNN YRWPVFEVVG VTSTMISFSV CFALFERDRE  300
DNYLWALERL RSLLDENTLP SVIVTDGEIP LINSVEKIFP DAKRLLCQWH IQMSVLAKAR  360
EFLDENDCKR FIDNWNDLML SSTANKYKIQ LERLERNFSD FPKVLHFIKE TWLPHKEFLV  420
SAWTDRYMHL GCTTTSRVEN AHAKLKRHIG KCSMFDFVGL WKVMHLMINE QITEIRVSFE  480
RSLNSVKHEH RILILKEVRG YVSREAIDLI LSERKHAFSM GLDADACMCI LHSTHGLPCA  540
HEIAIYDHDK CHIPLSSIHS FWKKLSGIPT LRDRGDLDNY PEFQMFVKHY EESDDVRKKY  600
LLKKLKELAD SATSWLVEPQ EDIEIEDQPK GSKLRKLLQI ESSS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	104	KKRKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026404714.1	0.0	PKS-NRPS hybrid synthetase CHGG_01239-like isoform X2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-14	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Aqcoe1G355700.3.p