PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G357900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 514aa    MW: 59417.9 Da    PI: 8.4536
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G357900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.42.7e-1926115291
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                        fYn+YAk  GF+v k++++    +g++ +r+f Cs+ g r+ +  + ++++++ r+ tr++C a++++  ++  + w v  + ++HnH lap
  Aqcoe1G357900.1.p  26 FYNKYAKFKGFTVHKDHKTVI--DGRTRRRRFICSCAGVRAGKWMNlHKQRKKARPLTRCNCPAEMNIVYDDaLNMWTVRGFMSQHNHVLAP 115
                        9*************9986665..999***************9999877888899****************9999**************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1626115IPR004330FAR1 DNA binding domain
PfamPF105511.1E-22176248IPR018289MULE transposase domain
PROSITE profilePS509668.691413449IPR007527Zinc finger, SWIM-type
SMARTSM005750.0023424451IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MSAFVDEFVE EISDDSEAED EDAYLFYNKY AKFKGFTVHK DHKTVIDGRT RRRRFICSCA  60
GVRAGKWMNL HKQRKKARPL TRCNCPAEMN IVYDDALNMW TVRGFMSQHN HVLAPPGGSH  120
FLRSHRKVSL SNAFLAPNLY ALGVSKKLVM DIIISKSGSH AATGYTARLV QSNEKMNNHR  180
HTVIYALALM NNETIDSYEW ALKTFLAVMD GIAPKSVITD GDVAIHNAIE NVFPKSKHRL  240
CVWHVVQNAI TNAWTEGFVK GFVEAMFCKG PPEAFEKMWA ELLIEYKTVA EKKWVHNIYE  300
KNEMWAEGYL REYFFAGCRS NQRCESINSI KIRHIRYRDF EAEVNTTMTR SAQITNLTLI  360
GEQAETLYTR AGYEYHFKQL LHEPSYVVNE SYEDGEDIIK YLVNRHIHPN APATVAYNRE  420
NDAYNCTWKL FERVGFLCRH ILAVLKHTHV KALPKSYILH RWTREAKSSS IDFGTNPTSC  480
RLGFVFRLKE LEEYTRDLFM WDCESVQRCS IYG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5CQK90.0A0A2G5CQK9_AQUCA; Uncharacterized protein
STRINGAquca_041_00123.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-41FAR1-related sequence 5