PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G362400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 460aa    MW: 51996.2 Da    PI: 8.6501
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G362400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.6e-06225126
                       --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                       +kt+lC  f+r G+C++  +C+FaHg
  Aqcoe1G362400.1.p  2 FKTKLCVLFQR-GECSR-QSCSFAHG 25
                       69*********.*****.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.568127IPR000571Zinc finger, CCCH-type
SMARTSM003560.0096126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-9231IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MFKTKLCVLF QRGECSRQSC SFAHGDSELR RFSSASASAS ASFNGRREYR GSDLRDKLER  60
RRSPQRRYSP ENDVRGRHTL HDHKQLQYAR GYNASRSPSR SERGQRRKAH LDGRTDISGT  120
LKVSDGGDGI KERKVISSSA KDLVEDQLKK VQFDVKMLVA RKDELEVYLE RKDLEAASLK  180
SRIEELEIQL NKEQEDCKRT SSMIKKFIKV HGRYSKAEED LKRSKARLHK LGDQFAANAS  240
RPNANDEDSG VNLVSDGEPN GDNGMISRTV RQHHPSPSKK RPRDSHEASE EAWTVPVSEK  300
LTKLGVLANQ SNYSSRESDG LHKIRNRIDA RRPLAYEERN IKRGKNESLS IPPGEKVKGF  360
ESGHALPPTC MAAHAVDDII DVIEMEKIEV VDATPTVFEK RTTRERTILP YLPPPPPLPV  420
ALKSVYKQYE GEDVDVDVEE LDMEGHDGDI NNEVDIEQL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010267784.11e-130PREDICTED: zinc finger CCCH domain-containing protein 13
TrEMBLA0A2G5CKQ90.0A0A2G5CKQ9_AQUCA; Uncharacterized protein
STRINGAquca_047_00008.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.19e-50C3H family protein