PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G365500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family CO-like
Protein Properties Length: 414aa    MW: 46058.7 Da    PI: 5.4852
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G365500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.96.6e-06538336
           zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg 36
                         +C+ ++  ++  +C+ +   lC +C ++ H+ 
  Aqcoe1G365500.1.p  5 DVRCEYCKVARAVVYCKPDTARLCLQCDSNVHST 38
                       679******99*******************9954 PP
2zf-B_box19.42.2e-064987439
           zf-B_box  4 rkCpeHeekelqlfCedCqqllCedCllee..Hkg..Htv 39
                        +C++++++++++ C d+++ lC++C  ++    +  H++
  Aqcoe1G365500.1.p 49 LICDRCKSEPAIIRCLDDKVSLCHNCDCNGqgC-RvgHRR 87
                       68************************9877664.234555 PP
3CCT639.5e-22360403144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        R++a++RYkeK+k+R F K+irY+sRKa+A++R+RvKGrFvk+ 
  Aqcoe1G365500.1.p 360 RDKAKMRYKEKKKNRTFGKQIRYASRKARADTRKRVKGRFVKAG 403
                        899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.286350IPR000315B-box-type zinc finger
SMARTSM003369.5E-10350IPR000315B-box-type zinc finger
CDDcd000212.21E-4637No hitNo description
PROSITE profilePS501199.2864690IPR000315B-box-type zinc finger
CDDcd000210.002075090No hitNo description
SMARTSM003361.35190IPR000315B-box-type zinc finger
PROSITE profilePS5101714.971360402IPR010402CCT domain
PfamPF062031.1E-16360402IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MWMEDVRCEY CKVARAVVYC KPDTARLCLQ CDSNVHSTNP FSQRHLRSLI CDRCKSEPAI  60
IRCLDDKVSL CHNCDCNGQG CRVGHRRLPL NFYSGCLSYT EFFRLWSSVL DTCSLRELNL  120
KSDQQGQWEH EESESGFVGF TGDNVLNELE QPCVGSSSVI PSRASIIPFN GDQQQVFTKE  180
LNLPQQGFPT LKEFEICEGN DFCEGFNIND VELNIDNRNE MLGCAQSHSN FQFENVGVDS  240
LSIHKNFAAA DSYQTNEIAI EALSLEQNDL IPLQSSCVAG ISNVVHGVNS ALSQVLPNPS  300
CNMNLGFPIG QVNSSMSVSL SNLSCESSAA DYQDCGVSPV FLQGESPWDA NMETSCPQAR  360
DKAKMRYKEK KKNRTFGKQI RYASRKARAD TRKRVKGRFV KAGEGDPLPS KDE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016666497.11e-139PREDICTED: zinc finger protein CONSTANS-LIKE 12-like
TrEMBLA0A2G5ERY30.0A0A2G5ERY3_AQUCA; Uncharacterized protein
STRINGAquca_005_00443.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.14e-87B-box type zinc finger protein with CCT domain