PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G369900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GRAS
Protein Properties Length: 586aa    MW: 65679.8 Da    PI: 5.1388
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G369900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS424.39.8e-1302165841373
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        l++lL+ecA+ +s+g  +  ++l++  + ++s +g+p+qRl ay++e+L ar  +s++++y+al++++ +   s+e l+++++++e++P+lk
  Aqcoe1G369900.1.p 216 LKRLLIECAKSLSEGR-NDFDKLIEDARSIVSISGEPIQRLGAYMVEGLVARKEKSGTNIYRALRCRQPE---SKELLSYMQILYEICPYLK 303
                        5789********9975.6789************************************************9...9****************** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                        f++++aN aI ea++ e+rvHi+Df+i qG+QW++L++aLa+R++gpp +RiTg+++p s+  +  +l+++gerLa + +++++p+ef++ v
  Aqcoe1G369900.1.p 304 FGYMAANGAIAEAFKYEDRVHIVDFQIAQGTQWMTLIEALAARTSGPPFMRITGIDDPVSKyaRGGSLQAVGERLAAMSKKFNIPIEFHA-V 394
                        **********************************************************99999999************************.7 PP

               GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                            +d++ e+L+v+pgEalaVn+ lqlh+++des +++++rde+L++v+slsPkvv+++eqe+++n+++F++rf+eal++ysa+f+s++++
  Aqcoe1G369900.1.p 395 PAFASDVTREMLDVRPGEALAVNFPLQLHHTPDESIDVNNPRDEMLRMVRSLSPKVVTLIEQESNTNTTPFVTRFAEALDFYSAMFESIDVT 486
                        9999**************************************************************************************** PP

               GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                        +pr+s+eri+vE+++l+r+ vnv+aceg+er+erhe l+kW++r+++aGF+p pls++++  ++ llr ++ + y++ e++g+++lgWkdr+
  Aqcoe1G369900.1.p 487 MPRDSKERISVEQQCLARDMVNVIACEGKERVERHELLGKWKSRFTMAGFQPFPLSSHVNHVIRGLLRCYS-EHYTLVEKDGAMLLGWKDRN 577
                        *******************************************************************9999.66****************** PP

               GRAS 367 LvsvSaW 373
                        Lvs+SaW
  Aqcoe1G369900.1.p 578 LVSASAW 584
                        ******* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.778190566IPR005202Transcription factor GRAS
PfamPF035143.4E-127216584IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MDMQQILRYS VTGANISYES SLSTAPLMSE WMAGPMKFEL RNSLNSSRCT QLDSETCSSL  60
SSNQEQYSSS GNLSEFSPNS SLEYNNSFHQ ISPSPTSFSD TLQFSSGESS GSQDPNYHQN  120
MKYVLREIET ALLGPDGDDD EGVGNTACAT FGENKHPETS TQRPRSFSDE PCPESYNDQP  180
TPSFTSTDQY SSYVVQAEKR HRLMQAPSPE NPQCNLKRLL IECAKSLSEG RNDFDKLIED  240
ARSIVSISGE PIQRLGAYMV EGLVARKEKS GTNIYRALRC RQPESKELLS YMQILYEICP  300
YLKFGYMAAN GAIAEAFKYE DRVHIVDFQI AQGTQWMTLI EALAARTSGP PFMRITGIDD  360
PVSKYARGGS LQAVGERLAA MSKKFNIPIE FHAVPAFASD VTREMLDVRP GEALAVNFPL  420
QLHHTPDESI DVNNPRDEML RMVRSLSPKV VTLIEQESNT NTTPFVTRFA EALDFYSAMF  480
ESIDVTMPRD SKERISVEQQ CLARDMVNVI ACEGKERVER HELLGKWKSR FTMAGFQPFP  540
LSSHVNHVIR GLLRCYSEHY TLVEKDGAML LGWKDRNLVS ASAWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-6322258424377Protein SCARECROW
5b3h_D3e-6322258424377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010267831.10.0PREDICTED: chitin-inducible gibberellin-responsive protein 1-like
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2G5ERS90.0A0A2G5ERS9_AQUCA; Uncharacterized protein
STRINGAquca_005_00404.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-173GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]