PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G372700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 207aa    MW: 23671.1 Da    PI: 6.2904
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G372700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.80.000223978555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       + e+ErrRR+++N+++ +Lr l+ ka           +i   A+ YI  Lq
  Aqcoe1G372700.1.p 39 NLEAERRRRHKLNERLINLRALMNKA-----------TIIDDAITYITGLQ 78
                       6689****************998555...........78888888887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-113193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-73282No hitNo description
Gene3DG3DSA:4.10.280.104.4E-83495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-64083IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.3E-5129197No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MEYTNSLMEE FYVQNELAEQ GRRGRGKNIN DDTQFKSKNL EAERRRRHKL NERLINLRAL  60
MNKATIIDDA ITYITGLQKH VKGLGDQLME METQETEKQG SVGGRVQEEQ IEKLQIEAEV  120
KVTCLDERRL WFKIVCDSKR GGFTKLMEIM NSLGFEITDI NVTTSKGVTL IMFCVEVTNA  180
GMIAINQLQH YLLQVMGSTT ENRQCS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016648145.18e-50PREDICTED: LOW QUALITY PROTEIN: transcription factor DYT1
TrEMBLA0A2G5ERV71e-63A0A2G5ERV7_AQUCA; Uncharacterized protein
STRINGAquca_005_00413.12e-64(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.16e-28bHLH family protein