PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G378700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family CO-like
Protein Properties Length: 412aa    MW: 45016.9 Da    PI: 5.3296
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G378700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.71.7e-06344439
           zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                       + C+ ++e++   +C+++  +lC +C  + H+       H++
  Aqcoe1G378700.1.p  3 PLCDFCGEQRSMVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44
                       68*****************************65677777766 PP
2zf-B_box25.33.2e-084690441
           zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg........Htvvp 41
                         C++++++++++ C + ++ lC++C   +H g        H++++
  Aqcoe1G378700.1.p 46 LLCERCSSQPATIRCLEEKTSLCQNCDWDGH-GastsssstHKRQT 90
                       57*****************************.55788888888766 PP
3CCT66.76.4e-23354397144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        R+ a++RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 
  Aqcoe1G378700.1.p 354 RDSAVMRYKEKKKSRKFDKKIRYASRKARADVRKRVKGRFVKAG 397
                        899**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.641147IPR000315B-box-type zinc finger
SMARTSM003368.6E-11147IPR000315B-box-type zinc finger
CDDcd000215.86E-8347No hitNo description
PROSITE profilePS501198.9874391IPR000315B-box-type zinc finger
CDDcd000211.25E-44791No hitNo description
SMARTSM0033624891IPR000315B-box-type zinc finger
PROSITE profilePS5101715.646354396IPR010402CCT domain
PfamPF062031.6E-17354396IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MGPLCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCER CSSQPATIRC  60
LEEKTSLCQN CDWDGHGAST SSSSTHKRQT IKYYSGCPSA AELSRIWSFV LDFPAMEESN  120
CEQRTGLMSI DENVSSSCWG SPGKTGMLEN ANGGNEVDKF DSWMASSSMC VPNPIPSQVD  180
QTAGSVDSST SKKYTSETKG LGLCEDDFCE DFDVDDMELN FENYEELFGN SQTNSEQLLE  240
NGGLDSLFGV KDMSVADSSC HGGYDTEGVS AKKGKVVQPT CSNGVSTDSA MSAKTEPNLY  300
YHARQGHSSL SFSGLTGESS AGDYQDCGVS PMLLMGDSSL YPLGAENTHP SFSRDSAVMR  360
YKEKKKSRKF DKKIRYASRK ARADVRKRVK GRFVKAGDAY DYDPLCQTKS Y*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245014.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
SwissprotQ9LUA91e-136COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A2G5ERI00.0A0A2G5ERI0_AQUCA; Uncharacterized protein
STRINGAquca_005_00332.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-105B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]