PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G379100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NF-YB
Protein Properties Length: 346aa    MW: 38440.2 Da    PI: 9.1469
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G379100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB69.36.9e-2243136797
              NF-YB   7 flPianvsrimkkvlP...anakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                        +lP   + +im k+lP     + is+++   +qec se+i  v++ea ++cq+ekr+ ++gddll+ + +lG+ ++++ l++y++++r+ ++
  Aqcoe1G379100.1.p  43 YLPEKKIKKIMAKMLPflpPGSNISNETIMFMQECTSEYIRRVSGEAFEHCQKEKRNMVTGDDLLFGIEKLGLGHHAQMLSTYMQQHRDRDR 134
                        799999******98752227899*****************************************************************9998 PP

              NF-YB  96 ek 97 
                        ++
  Aqcoe1G379100.1.p 135 DH 136
                        75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.85E-1741132IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.1E-2141136IPR009072Histone-fold
PfamPF008082.3E-1143107IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.4E-57492No hitNo description
PRINTSPR006155.4E-593111No hitNo description
PRINTSPR006155.4E-5112130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MENKGSHRNQ KKKSSSTSAM ENSSTISEHR SSEQPPSLKP ELYLPEKKIK KIMAKMLPFL  60
PPGSNISNET IMFMQECTSE YIRRVSGEAF EHCQKEKRNM VTGDDLLFGI EKLGLGHHAQ  120
MLSTYMQQHR DRDRDHSMGL GSSAGQRVDL IVNGGRVGVA PPTCHLRNNQ QGKVVNGDGS  180
FQNPSLVMNK GTKPYDSCSQ GLDLNLAYNH PDNVNSVFPK DDPRGKRGET SASAFYERNN  240
QQHGKCVING ANLYRIPSRA LEIRTKHQVQ SSGMNGPVDP HVKRSQTGIF NVPNNHQEVK  300
RVKRNYIEPM TTENSEGDGS MVIDEPPIAW CPDGGMVQPK SEKNV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A7e-15431311297NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5ERG10.0A0A2G5ERG1_AQUCA; Uncharacterized protein
STRINGAquca_005_00329.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47640.13e-18nuclear factor Y, subunit B2