PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G379500.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Trihelix

Protein Properties

Length: 593aa MW: 67016.4 Da PI: 6.3521

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G379500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	91	1.3e-28	444	528	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ ev+aLi +r+ + +++++++lk+ Wee+s m++ gf+rs+k+Ckekwen+nk++kk ++ ++r +s++tcpyfd+l+ Aqcoe1G379500.1.p 444 RWPEPEVKALISIRTGIAHKFQTSELKQSVWEEISGTMSSMGFNRSAKKCKEKWENINKYFKKSVASGQQR-RRSKKTCPYFDELH 528 8***************************************************************99998.677789****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.364	437	501	IPR017877	Myb-like domain
CDD	cd12203	7.64E-27	443	507	No hit	No description
Pfam	PF13837	6.8E-21	443	528	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence Send to blast
MTLTNISDEI SPFPDAGNLL YGERSSFPTQ KLLPIRSNGD EDSSSPTNLA SGSSSPHIVT 60 SNEDSNMEME IDGNPSSASN KGPLWEIVAN RKLEQMGYEY PKDNIFSQLL AFGNRNNNND 120 DGSEKQMSEE NGSVQAQAQP SVPPDPIDIA NMLVALHTTS AEFQENEESN RENKGESGEE 180 GIVDVLKRKR KRRNYSEIEL VLLSMVDRLM KKQEEMHKQL LDLIDKQEKE RIAREEAWRE 240 QELERHKKER EVRDRETSRN VALISYIGKF LGKQIEVPKL PQPPRLDESQ YQAQDKLRSS 300 AQKVQLIHIP VSPHPGVQQS QHPGEHQSPH PGVHQSPHPS VRQPPHLGEH QSPHPGEHQS 360 PHPSVHQFQH PGQHQSPHPG EHQSPRPGEH QSPRPGEHQD EAENRLGSTA KMVEPVQSLQ 420 YPETPYPDDC QDQAEYKLAL RSNRWPEPEV KALISIRTGI AHKFQTSELK QSVWEEISGT 480 MSSMGFNRSA KKCKEKWENI NKYFKKSVAS GQQRRRSKKT CPYFDELHVL YQNGSLNFKT 540 PFEVRMEGEA FENRELQACN QLAVTLVPDI VPSSTPADFS EGIRSSLPPK VS*

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence Send to blast

MTLTNISDEI SPFPDAGNLL YGERSSFPTQ KLLPIRSNGD EDSSSPTNLA SGSSSPHIVT  60
SNEDSNMEME IDGNPSSASN KGPLWEIVAN RKLEQMGYEY PKDNIFSQLL AFGNRNNNND  120
DGSEKQMSEE NGSVQAQAQP SVPPDPIDIA NMLVALHTTS AEFQENEESN RENKGESGEE  180
GIVDVLKRKR KRRNYSEIEL VLLSMVDRLM KKQEEMHKQL LDLIDKQEKE RIAREEAWRE  240
QELERHKKER EVRDRETSRN VALISYIGKF LGKQIEVPKL PQPPRLDESQ YQAQDKLRSS  300
AQKVQLIHIP VSPHPGVQQS QHPGEHQSPH PGVHQSPHPS VRQPPHLGEH QSPHPGEHQS  360
PHPSVHQFQH PGQHQSPHPG EHQSPRPGEH QSPRPGEHQD EAENRLGSTA KMVEPVQSLQ  420
YPETPYPDDC QDQAEYKLAL RSNRWPEPEV KALISIRTGI AHKFQTSELK QSVWEEISGT  480
MSSMGFNRSA KKCKEKWENI NKYFKKSVAS GQQRRRSKKT CPYFDELHVL YQNGSLNFKT  540
PFEVRMEGEA FENRELQACN QLAVTLVPDI VPSSTPADFS EGIRSSLPPK VS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	192	KRKRKRR
2	187	192	RKRKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G5ERF4	0.0	A0A2G5ERF4_AQUCA; Uncharacterized protein
STRING	Aquca_005_00325.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	3e-27	GT-2-like 1

Link Out ? help Back to Top
Phytozome	Aqcoe1G379500.1.p