PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G379500.3.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Trihelix

Protein Properties

Length: 584aa MW: 66012.4 Da PI: 6.3115

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G379500.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	91	1.3e-28	435	519	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ ev+aLi +r+ + +++++++lk+ Wee+s m++ gf+rs+k+Ckekwen+nk++kk ++ ++r +s++tcpyfd+l+ Aqcoe1G379500.3.p 435 RWPEPEVKALISIRTGIAHKFQTSELKQSVWEEISGTMSSMGFNRSAKKCKEKWENINKYFKKSVASGQQR-RRSKKTCPYFDELH 519 8***************************************************************99998.677789****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.364	428	492	IPR017877	Myb-like domain
Pfam	PF13837	6.7E-21	434	519	No hit	No description
CDD	cd12203	1.09E-26	434	498	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence Send to blast
MTLTNISDEI SPFPDAGNLL YGERSSFPTQ KLLPIRSNGD EDSSSPTNLA SGSSSPHIVT 60 SNEDSNMEME IDGNPSSASN KGPLWEIVAK KLEQMGYEYP KDNIFSQLLA FGNRNNNNDD 120 GSEKQMSEEN GSVQAQAQPS VPPDPIDIAN MLVALHTTSA EFQENEESNR ENKGESGEEG 180 IVDVLKRKRK RRNYSEIELV LLSMVDRLMK KQEEMHKQLL DLIDKQEKER IAREEAWREQ 240 ELERHKKERE VRDRETSRNV ALISYIGKFL GKQIEVPKLP QPPRLDESQY QAQDKLRSSA 300 QKVQLIHIPV SPHPGEHQSP HPGVHQSPHP SVRQPPHLGE HQSPHPGEHQ SPHPSVHQFQ 360 HPGQHQSPHP GEHQSPRPGE HQSPRPGEHQ DEAENRLGST AKMVEPVQSL QYPETPYPDD 420 CQDQAEYKLA LRSNRWPEPE VKALISIRTG IAHKFQTSEL KQSVWEEISG TMSSMGFNRS 480 AKKCKEKWEN INKYFKKSVA SGQQRRRSKK TCPYFDELHV LYQNGSLNFK TPFEVRMEGE 540 AFENRELQAC NQLAVTLVPD IVPSSTPADF SEGIRSSLPP KVS*

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence Send to blast

MTLTNISDEI SPFPDAGNLL YGERSSFPTQ KLLPIRSNGD EDSSSPTNLA SGSSSPHIVT  60
SNEDSNMEME IDGNPSSASN KGPLWEIVAK KLEQMGYEYP KDNIFSQLLA FGNRNNNNDD  120
GSEKQMSEEN GSVQAQAQPS VPPDPIDIAN MLVALHTTSA EFQENEESNR ENKGESGEEG  180
IVDVLKRKRK RRNYSEIELV LLSMVDRLMK KQEEMHKQLL DLIDKQEKER IAREEAWREQ  240
ELERHKKERE VRDRETSRNV ALISYIGKFL GKQIEVPKLP QPPRLDESQY QAQDKLRSSA  300
QKVQLIHIPV SPHPGEHQSP HPGVHQSPHP SVRQPPHLGE HQSPHPGEHQ SPHPSVHQFQ  360
HPGQHQSPHP GEHQSPRPGE HQSPRPGEHQ DEAENRLGST AKMVEPVQSL QYPETPYPDD  420
CQDQAEYKLA LRSNRWPEPE VKALISIRTG IAHKFQTSEL KQSVWEEISG TMSSMGFNRS  480
AKKCKEKWEN INKYFKKSVA SGQQRRRSKK TCPYFDELHV LYQNGSLNFK TPFEVRMEGE  540
AFENRELQAC NQLAVTLVPD IVPSSTPADF SEGIRSSLPP KVS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	191	KRKRKRR
2	186	191	RKRKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G5ERF4	0.0	A0A2G5ERF4_AQUCA; Uncharacterized protein
STRING	Aquca_005_00325.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	3e-27	GT-2-like 1

Link Out ? help Back to Top
Phytozome	Aqcoe1G379500.3.p