PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G379500.5.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Trihelix

Protein Properties

Length: 577aa MW: 65284.6 Da PI: 6.2948

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G379500.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	91	1.2e-28	428	512	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ ev+aLi +r+ + +++++++lk+ Wee+s m++ gf+rs+k+Ckekwen+nk++kk ++ ++r +s++tcpyfd+l+ Aqcoe1G379500.5.p 428 RWPEPEVKALISIRTGIAHKFQTSELKQSVWEEISGTMSSMGFNRSAKKCKEKWENINKYFKKSVASGQQR-RRSKKTCPYFDELH 512 8***************************************************************99998.677789****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.364	421	485	IPR017877	Myb-like domain
CDD	cd12203	1.33E-26	427	491	No hit	No description
Pfam	PF13837	6.5E-21	427	512	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence Send to blast
MTLTNISDEI SPFPDAGNLL YGERSSFPTQ KLLPIRSNGD EDSSSPTNLA SGSSSPHIVT 60 SNEDSNMEME IDGNPSSASN KGPLWEIVAN RKLEQMGYEY PKDNIFSQLL AFGNRNNNND 120 DGSEKQMSEE NGSVQAQAQP SVPPDPIDIA NMLVALHTTS AEFQENEESN RENKGESGEE 180 GIVDVLKRKR KRRNYSEIEL VLLSMVDRLM KKQEEMHKQL LDLIDKQEKE RIAREEAWRE 240 QELERHKKER EVRDRETSRN VALISYIGKF LGKQIEVPKL PQPPRLDESQ YQAQDKLRSS 300 AQKVQLIHIP VSPHPGEHQS PHPGVHQSPH PSVRQPPHLG EHQSPHPSVH QFQHPGQHQS 360 PHPGEHQSPR PGEHQSPRPG EHQDEAENRL GSTAKMVEPV QSLQYPETPY PDDCQDQAEY 420 KLALRSNRWP EPEVKALISI RTGIAHKFQT SELKQSVWEE ISGTMSSMGF NRSAKKCKEK 480 WENINKYFKK SVASGQQRRR SKKTCPYFDE LHVLYQNGSL NFKTPFEVRM EGEAFENREL 540 QACNQLAVTL VPDIVPSSTP ADFSEGIRSS LPPKVS*

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence Send to blast

MTLTNISDEI SPFPDAGNLL YGERSSFPTQ KLLPIRSNGD EDSSSPTNLA SGSSSPHIVT  60
SNEDSNMEME IDGNPSSASN KGPLWEIVAN RKLEQMGYEY PKDNIFSQLL AFGNRNNNND  120
DGSEKQMSEE NGSVQAQAQP SVPPDPIDIA NMLVALHTTS AEFQENEESN RENKGESGEE  180
GIVDVLKRKR KRRNYSEIEL VLLSMVDRLM KKQEEMHKQL LDLIDKQEKE RIAREEAWRE  240
QELERHKKER EVRDRETSRN VALISYIGKF LGKQIEVPKL PQPPRLDESQ YQAQDKLRSS  300
AQKVQLIHIP VSPHPGEHQS PHPGVHQSPH PSVRQPPHLG EHQSPHPSVH QFQHPGQHQS  360
PHPGEHQSPR PGEHQSPRPG EHQDEAENRL GSTAKMVEPV QSLQYPETPY PDDCQDQAEY  420
KLALRSNRWP EPEVKALISI RTGIAHKFQT SELKQSVWEE ISGTMSSMGF NRSAKKCKEK  480
WENINKYFKK SVASGQQRRR SKKTCPYFDE LHVLYQNGSL NFKTPFEVRM EGEAFENREL  540
QACNQLAVTL VPDIVPSSTP ADFSEGIRSS LPPKVS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	192	KRKRKRR
2	187	192	RKRKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G5ERF4	0.0	A0A2G5ERF4_AQUCA; Uncharacterized protein
STRING	Aquca_005_00325.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	3e-27	GT-2-like 1

Link Out ? help Back to Top
Phytozome	Aqcoe1G379500.5.p